A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.3
nTPM
Monaco:
327.8
nTPM
Schmiedel:
117.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
HPA sample
nTPM
Memory B-cell nTPM: 25.3
Samples: 6
Max nTPM: 44.6
Min nTPM: 7.7
P10809_1017
29.6
P10809_1025
42.3
P10809_1044
16.6
P10809_1063
10.9
P10809_1092
44.6
P10809_1105
7.7
Naive B-cell nTPM: 24.7
Samples: 6
Max nTPM: 46.6
Min nTPM: 6.3
P10809_1011
18.8
P10809_1029
32.1
P10809_1048
46.6
P10809_1067
6.3
P10809_1091
27.0
P10809_1104
17.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
327.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 96.9
Samples: 4
Max nTPM: 123.3
Min nTPM: 71.7
RHH5310_R3677
71.7
RHH5218_R3590
123.3
RHH5247_R3619
96.4
RHH5276_R3648
96.0
Naive B-cell nTPM: 59.7
Samples: 4
Max nTPM: 71.8
Min nTPM: 45.8
RHH5308_R3675
71.8
RHH5216_R3588
54.5
RHH5245_R3617
66.8
RHH5274_R3646
45.8
Non-switched memory B-cell nTPM: 102.6
Samples: 4
Max nTPM: 138.4
Min nTPM: 45.2
RHH5309_R3676
138.4
RHH5217_R3589
45.2
RHH5246_R3618
134.3
RHH5275_R3647
92.5
Plasmablast nTPM: 327.8
Samples: 4
Max nTPM: 437.3
Min nTPM: 179.3
RHH5312_R3679
179.3
RHH5220_R3592
332.8
RHH5249_R3621
437.3
RHH5278_R3650
361.7
Switched memory B-cell nTPM: 50.1
Samples: 4
Max nTPM: 72.2
Min nTPM: 26.8
RHH5311_R3678
36.1
RHH5219_R3591
65.2
RHH5248_R3620
26.8
RHH5277_R3649
72.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.4
Schmiedel sample id
TPM
Naive B-cell TPM: 117.4
Samples: 91
Max TPM: 170.7
Min TPM: 42.6
B_CELL_NAIVE_1
170.7
B_CELL_NAIVE_2
169.3
B_CELL_NAIVE_3
166.4
B_CELL_NAIVE_4
162.1
B_CELL_NAIVE_5
160.6
B_CELL_NAIVE_6
158.0
B_CELL_NAIVE_7
157.4
B_CELL_NAIVE_8
154.9
B_CELL_NAIVE_9
151.4
B_CELL_NAIVE_10
150.6
B_CELL_NAIVE_11
149.8
B_CELL_NAIVE_12
146.4
B_CELL_NAIVE_13
146.3
B_CELL_NAIVE_14
144.3
B_CELL_NAIVE_15
144.0
B_CELL_NAIVE_16
143.3
B_CELL_NAIVE_17
142.2
B_CELL_NAIVE_18
141.1
B_CELL_NAIVE_19
140.0
B_CELL_NAIVE_20
138.3
B_CELL_NAIVE_21
138.0
B_CELL_NAIVE_22
136.0
B_CELL_NAIVE_23
136.0
B_CELL_NAIVE_24
135.0
B_CELL_NAIVE_25
134.6
B_CELL_NAIVE_26
134.4
B_CELL_NAIVE_27
134.1
B_CELL_NAIVE_28
131.3
B_CELL_NAIVE_29
131.1
B_CELL_NAIVE_30
130.1
B_CELL_NAIVE_31
129.6
B_CELL_NAIVE_32
129.4
B_CELL_NAIVE_33
128.6
B_CELL_NAIVE_34
128.4
B_CELL_NAIVE_35
127.9
B_CELL_NAIVE_36
127.2
B_CELL_NAIVE_37
126.8
B_CELL_NAIVE_38
126.2
B_CELL_NAIVE_39
125.0
B_CELL_NAIVE_40
124.9
B_CELL_NAIVE_41
124.6
B_CELL_NAIVE_42
124.1
B_CELL_NAIVE_43
124.1
B_CELL_NAIVE_44
123.8
B_CELL_NAIVE_45
122.4
B_CELL_NAIVE_46
121.2
B_CELL_NAIVE_47
120.2
B_CELL_NAIVE_48
120.0
B_CELL_NAIVE_49
118.7
B_CELL_NAIVE_50
118.6
B_CELL_NAIVE_51
114.8
B_CELL_NAIVE_52
114.7
B_CELL_NAIVE_53
113.0
B_CELL_NAIVE_54
112.6
B_CELL_NAIVE_55
112.1
B_CELL_NAIVE_56
111.3
B_CELL_NAIVE_57
110.8
B_CELL_NAIVE_58
109.6
B_CELL_NAIVE_59
108.8
B_CELL_NAIVE_60
107.8
B_CELL_NAIVE_61
107.6
B_CELL_NAIVE_62
107.2
B_CELL_NAIVE_63
107.1
B_CELL_NAIVE_64
106.9
B_CELL_NAIVE_65
106.5
B_CELL_NAIVE_66
106.4
B_CELL_NAIVE_67
105.9
B_CELL_NAIVE_68
105.3
B_CELL_NAIVE_69
105.0
B_CELL_NAIVE_70
103.6
B_CELL_NAIVE_71
101.4
B_CELL_NAIVE_72
101.4
B_CELL_NAIVE_73
101.2
B_CELL_NAIVE_74
99.7
B_CELL_NAIVE_75
99.6
B_CELL_NAIVE_76
90.9
B_CELL_NAIVE_77
89.7
B_CELL_NAIVE_78
87.9
B_CELL_NAIVE_79
87.0
B_CELL_NAIVE_80
83.0
B_CELL_NAIVE_81
81.6
B_CELL_NAIVE_82
81.2
B_CELL_NAIVE_83
77.9
B_CELL_NAIVE_84
76.0
B_CELL_NAIVE_85
72.4
B_CELL_NAIVE_86
62.1
B_CELL_NAIVE_87
54.4
B_CELL_NAIVE_88
54.1
B_CELL_NAIVE_89
49.7
B_CELL_NAIVE_90
43.5
B_CELL_NAIVE_91
42.6
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