A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
96.2
nTPM
Monaco:
250.2
nTPM
Schmiedel:
224.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.2
HPA sample
nTPM
Classical monocyte nTPM: 96.2
Samples: 6
Max nTPM: 168.5
Min nTPM: 31.4
P10809_1003
115.4
P10809_1020
109.4
P10809_1039
168.5
P10809_1058
31.4
P10809_1080
40.8
P10809_1107
111.6
Intermediate monocyte nTPM: 57.8
Samples: 6
Max nTPM: 106.3
Min nTPM: 18.4
P10809_1004
106.3
P10809_1023
62.5
P10809_1042
54.4
P10809_1061
20.0
P10809_1081
18.4
P10809_1108
85.4
Non-classical monocyte nTPM: 39.4
Samples: 5
Max nTPM: 75.7
Min nTPM: 16.3
P10809_1005
75.7
P10809_1053
16.3
P10809_1072
19.0
P10809_1082
26.6
P10809_1109
59.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
250.2
Monaco sample
nTPM
Classical monocyte nTPM: 250.2
Samples: 4
Max nTPM: 336.4
Min nTPM: 172.4
RHH5313_R3680
268.4
RHH5221_R3593
336.4
RHH5250_R3622
223.5
RHH5279_R3651
172.4
Intermediate monocyte nTPM: 161.5
Samples: 4
Max nTPM: 216.9
Min nTPM: 73.2
RHH5314_R3681
216.9
RHH5222_R3594
182.2
RHH5251_R3623
173.5
RHH5280_R3652
73.2
Non-classical monocyte nTPM: 124.4
Samples: 4
Max nTPM: 163.6
Min nTPM: 40.6
RHH5315_R3682
163.6
RHH5223_R3595
134.5
RHH5252_R3624
158.8
RHH5281_R3653
40.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.1
Schmiedel sample id
TPM
Classical monocyte TPM: 224.1
Samples: 91
Max TPM: 323.6
Min TPM: 147.0
MONOCYTES_1
323.6
MONOCYTES_2
321.4
MONOCYTES_3
290.5
MONOCYTES_4
282.5
MONOCYTES_5
279.4
MONOCYTES_6
277.5
MONOCYTES_7
277.3
MONOCYTES_8
276.7
MONOCYTES_9
275.5
MONOCYTES_10
270.9
MONOCYTES_11
269.7
MONOCYTES_12
268.4
MONOCYTES_13
267.4
MONOCYTES_14
266.6
MONOCYTES_15
264.6
MONOCYTES_16
258.5
MONOCYTES_17
258.3
MONOCYTES_18
257.7
MONOCYTES_19
257.3
MONOCYTES_20
255.1
MONOCYTES_21
252.8
MONOCYTES_22
250.0
MONOCYTES_23
249.8
MONOCYTES_24
248.0
MONOCYTES_25
246.2
MONOCYTES_26
244.4
MONOCYTES_27
243.0
MONOCYTES_28
242.5
MONOCYTES_29
240.7
MONOCYTES_30
239.7
MONOCYTES_31
239.4
MONOCYTES_32
239.1
MONOCYTES_33
239.1
MONOCYTES_34
237.6
MONOCYTES_35
237.4
MONOCYTES_36
235.9
MONOCYTES_37
235.7
MONOCYTES_38
235.2
MONOCYTES_39
234.6
MONOCYTES_40
234.3
MONOCYTES_41
231.0
MONOCYTES_42
230.2
MONOCYTES_43
228.5
MONOCYTES_44
228.3
MONOCYTES_45
227.3
MONOCYTES_46
224.2
MONOCYTES_47
224.2
MONOCYTES_48
222.9
MONOCYTES_49
221.5
MONOCYTES_50
220.5
MONOCYTES_51
220.4
MONOCYTES_52
219.9
MONOCYTES_53
218.6
MONOCYTES_54
218.0
MONOCYTES_55
217.8
MONOCYTES_56
217.8
MONOCYTES_57
212.2
MONOCYTES_58
210.6
MONOCYTES_59
210.1
MONOCYTES_60
209.9
MONOCYTES_61
205.3
MONOCYTES_62
202.3
MONOCYTES_63
202.0
MONOCYTES_64
201.8
MONOCYTES_65
199.9
MONOCYTES_66
199.6
MONOCYTES_67
199.3
MONOCYTES_68
198.7
MONOCYTES_69
192.3
MONOCYTES_70
191.4
MONOCYTES_71
191.4
MONOCYTES_72
188.2
MONOCYTES_73
187.4
MONOCYTES_74
186.1
MONOCYTES_75
185.3
MONOCYTES_76
185.0
MONOCYTES_77
184.8
MONOCYTES_78
182.5
MONOCYTES_79
182.2
MONOCYTES_80
181.3
MONOCYTES_81
179.7
MONOCYTES_82
177.2
MONOCYTES_83
176.9
MONOCYTES_84
176.6
MONOCYTES_85
173.7
MONOCYTES_86
163.7
MONOCYTES_87
156.4
MONOCYTES_88
155.3
MONOCYTES_89
151.3
MONOCYTES_90
150.0
MONOCYTES_91
147.0
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Non-classical monocyte TPM: 113.0
Samples: 90
Max TPM: 175.2
Min TPM: 49.5
M2_1
175.2
M2_2
169.0
M2_3
166.6
M2_4
159.7
M2_5
150.5
M2_6
146.8
M2_7
146.4
M2_8
145.1
M2_9
144.9
M2_10
144.5
M2_11
141.2
M2_12
139.6
M2_13
139.3
M2_14
138.1
M2_15
137.4
M2_16
136.2
M2_17
133.1
M2_18
131.0
M2_19
130.0
M2_20
128.6
M2_21
128.0
M2_22
127.5
M2_23
127.3
M2_24
127.0
M2_25
126.8
M2_26
124.9
M2_27
124.7
M2_28
124.7
M2_29
124.0
M2_30
122.4
M2_31
120.9
M2_32
120.5
M2_33
120.5
M2_34
119.8
M2_35
119.6
M2_36
118.6
M2_37
118.0
M2_38
117.5
M2_39
117.2
M2_40
116.2
M2_41
115.8
M2_42
115.6
M2_43
114.8
M2_44
114.0
M2_45
113.7
M2_46
113.2
M2_47
112.7
M2_48
112.2
M2_49
111.4
M2_50
111.1
M2_51
110.6
M2_52
110.5
M2_53
110.5
M2_54
110.1
M2_55
109.5
M2_56
109.4
M2_57
109.1
M2_58
108.7
M2_59
106.8
M2_60
105.6
M2_61
105.0
M2_62
103.9
M2_63
103.8
M2_64
102.0
M2_65
101.8
M2_66
101.8
M2_67
101.4
M2_68
100.4
M2_69
99.3
M2_70
99.3
M2_71
96.0
M2_72
94.9
M2_73
91.6
M2_74
89.9
M2_75
87.1
M2_76
85.0
M2_77
84.8
M2_78
84.4
M2_79
80.6
M2_80
79.8
M2_81
79.0
M2_82
77.3
M2_83
76.8
M2_84
73.9
M2_85
73.2
M2_86
73.2
M2_87
67.6
M2_88
66.1
M2_89
64.5
M2_90
49.5
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