A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.0
nTPM
Monaco:
102.9
nTPM
Schmiedel:
84.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.0
HPA sample
nTPM
Memory B-cell nTPM: 10.0
Samples: 6
Max nTPM: 26.4
Min nTPM: 0.6
P10809_1017
26.4
P10809_1025
8.7
P10809_1044
0.6
P10809_1063
6.4
P10809_1092
8.1
P10809_1105
9.9
Naive B-cell nTPM: 8.0
Samples: 6
Max nTPM: 19.7
Min nTPM: 1.3
P10809_1011
19.7
P10809_1029
6.9
P10809_1048
1.3
P10809_1067
3.9
P10809_1091
9.2
P10809_1104
7.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 101.2
Samples: 4
Max nTPM: 131.4
Min nTPM: 75.4
RHH5310_R3677
90.4
RHH5218_R3590
131.4
RHH5247_R3619
75.4
RHH5276_R3648
107.5
Naive B-cell nTPM: 90.8
Samples: 4
Max nTPM: 112.0
Min nTPM: 65.3
RHH5308_R3675
76.3
RHH5216_R3588
109.7
RHH5245_R3617
112.0
RHH5274_R3646
65.3
Non-switched memory B-cell nTPM: 91.6
Samples: 4
Max nTPM: 101.2
Min nTPM: 71.0
RHH5309_R3676
101.2
RHH5217_R3589
93.4
RHH5246_R3618
71.0
RHH5275_R3647
100.9
Plasmablast nTPM: 56.2
Samples: 4
Max nTPM: 64.7
Min nTPM: 44.4
RHH5312_R3679
64.7
RHH5220_R3592
56.5
RHH5249_R3621
44.4
RHH5278_R3650
59.1
Switched memory B-cell nTPM: 102.9
Samples: 4
Max nTPM: 124.5
Min nTPM: 94.6
RHH5311_R3678
96.8
RHH5219_R3591
95.8
RHH5248_R3620
124.5
RHH5277_R3649
94.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.0
Schmiedel sample id
TPM
Naive B-cell TPM: 84.0
Samples: 91
Max TPM: 138.6
Min TPM: 34.8
B_CELL_NAIVE_1
138.6
B_CELL_NAIVE_2
112.5
B_CELL_NAIVE_3
112.0
B_CELL_NAIVE_4
108.6
B_CELL_NAIVE_5
107.2
B_CELL_NAIVE_6
104.5
B_CELL_NAIVE_7
104.4
B_CELL_NAIVE_8
104.2
B_CELL_NAIVE_9
103.4
B_CELL_NAIVE_10
103.1
B_CELL_NAIVE_11
102.7
B_CELL_NAIVE_12
102.4
B_CELL_NAIVE_13
102.3
B_CELL_NAIVE_14
101.9
B_CELL_NAIVE_15
101.1
B_CELL_NAIVE_16
100.4
B_CELL_NAIVE_17
100.3
B_CELL_NAIVE_18
100.0
B_CELL_NAIVE_19
99.2
B_CELL_NAIVE_20
98.7
B_CELL_NAIVE_21
98.6
B_CELL_NAIVE_22
98.6
B_CELL_NAIVE_23
98.4
B_CELL_NAIVE_24
97.6
B_CELL_NAIVE_25
97.5
B_CELL_NAIVE_26
96.3
B_CELL_NAIVE_27
96.3
B_CELL_NAIVE_28
96.1
B_CELL_NAIVE_29
96.0
B_CELL_NAIVE_30
95.7
B_CELL_NAIVE_31
95.3
B_CELL_NAIVE_32
95.0
B_CELL_NAIVE_33
94.1
B_CELL_NAIVE_34
93.9
B_CELL_NAIVE_35
93.4
B_CELL_NAIVE_36
92.7
B_CELL_NAIVE_37
91.3
B_CELL_NAIVE_38
90.9
B_CELL_NAIVE_39
90.8
B_CELL_NAIVE_40
90.2
B_CELL_NAIVE_41
89.9
B_CELL_NAIVE_42
89.2
B_CELL_NAIVE_43
88.9
B_CELL_NAIVE_44
87.7
B_CELL_NAIVE_45
87.5
B_CELL_NAIVE_46
87.4
B_CELL_NAIVE_47
87.1
B_CELL_NAIVE_48
86.9
B_CELL_NAIVE_49
85.4
B_CELL_NAIVE_50
85.0
B_CELL_NAIVE_51
84.8
B_CELL_NAIVE_52
84.8
B_CELL_NAIVE_53
84.7
B_CELL_NAIVE_54
83.9
B_CELL_NAIVE_55
83.5
B_CELL_NAIVE_56
82.6
B_CELL_NAIVE_57
82.3
B_CELL_NAIVE_58
81.7
B_CELL_NAIVE_59
79.9
B_CELL_NAIVE_60
79.6
B_CELL_NAIVE_61
78.8
B_CELL_NAIVE_62
78.7
B_CELL_NAIVE_63
78.0
B_CELL_NAIVE_64
78.0
B_CELL_NAIVE_65
77.9
B_CELL_NAIVE_66
73.6
B_CELL_NAIVE_67
72.7
B_CELL_NAIVE_68
71.8
B_CELL_NAIVE_69
71.3
B_CELL_NAIVE_70
71.2
B_CELL_NAIVE_71
70.8
B_CELL_NAIVE_72
70.4
B_CELL_NAIVE_73
69.6
B_CELL_NAIVE_74
69.5
B_CELL_NAIVE_75
66.8
B_CELL_NAIVE_76
65.9
B_CELL_NAIVE_77
65.5
B_CELL_NAIVE_78
62.8
B_CELL_NAIVE_79
62.3
B_CELL_NAIVE_80
61.6
B_CELL_NAIVE_81
57.4
B_CELL_NAIVE_82
56.0
B_CELL_NAIVE_83
54.9
B_CELL_NAIVE_84
52.8
B_CELL_NAIVE_85
48.4
B_CELL_NAIVE_86
48.2
B_CELL_NAIVE_87
43.9
B_CELL_NAIVE_88
43.3
B_CELL_NAIVE_89
37.3
B_CELL_NAIVE_90
36.5
B_CELL_NAIVE_91
34.8
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The Human Protein Atlas project is funded
