A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
72.2
nTPM
Monaco:
418.2
nTPM
Schmiedel:
278.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.2
HPA sample
nTPM
Classical monocyte nTPM: 26.5
Samples: 6
Max nTPM: 71.5
Min nTPM: 8.0
P10809_1003
71.5
P10809_1020
18.9
P10809_1039
8.0
P10809_1058
16.9
P10809_1080
23.0
P10809_1107
20.8
Intermediate monocyte nTPM: 46.3
Samples: 6
Max nTPM: 80.4
Min nTPM: 23.9
P10809_1004
80.4
P10809_1023
42.6
P10809_1042
47.5
P10809_1061
54.9
P10809_1081
23.9
P10809_1108
28.6
Non-classical monocyte nTPM: 72.2
Samples: 5
Max nTPM: 126.4
Min nTPM: 29.6
P10809_1005
126.4
P10809_1053
49.2
P10809_1072
102.9
P10809_1082
29.6
P10809_1109
52.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
418.2
Monaco sample
nTPM
Classical monocyte nTPM: 170.9
Samples: 4
Max nTPM: 187.4
Min nTPM: 155.5
RHH5313_R3680
178.5
RHH5221_R3593
162.1
RHH5250_R3622
187.4
RHH5279_R3651
155.5
Intermediate monocyte nTPM: 326.2
Samples: 4
Max nTPM: 436.6
Min nTPM: 277.4
RHH5314_R3681
277.4
RHH5222_R3594
436.6
RHH5251_R3623
307.2
RHH5280_R3652
283.7
Non-classical monocyte nTPM: 418.2
Samples: 4
Max nTPM: 526.3
Min nTPM: 348.5
RHH5315_R3682
387.8
RHH5223_R3595
526.3
RHH5252_R3624
410.1
RHH5281_R3653
348.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
278.0
Schmiedel sample id
TPM
Classical monocyte TPM: 125.4
Samples: 91
Max TPM: 166.2
Min TPM: 85.2
MONOCYTES_1
166.2
MONOCYTES_2
165.6
MONOCYTES_3
164.1
MONOCYTES_4
157.6
MONOCYTES_5
156.5
MONOCYTES_6
156.0
MONOCYTES_7
154.1
MONOCYTES_8
153.7
MONOCYTES_9
152.7
MONOCYTES_10
152.0
MONOCYTES_11
151.7
MONOCYTES_12
148.7
MONOCYTES_13
147.9
MONOCYTES_14
147.3
MONOCYTES_15
145.2
MONOCYTES_16
141.8
MONOCYTES_17
141.8
MONOCYTES_18
141.6
MONOCYTES_19
141.1
MONOCYTES_20
140.7
MONOCYTES_21
140.3
MONOCYTES_22
140.2
MONOCYTES_23
140.0
MONOCYTES_24
139.6
MONOCYTES_25
139.1
MONOCYTES_26
137.7
MONOCYTES_27
137.7
MONOCYTES_28
135.6
MONOCYTES_29
135.5
MONOCYTES_30
134.2
MONOCYTES_31
134.0
MONOCYTES_32
133.5
MONOCYTES_33
133.4
MONOCYTES_34
132.7
MONOCYTES_35
132.0
MONOCYTES_36
131.2
MONOCYTES_37
131.0
MONOCYTES_38
130.5
MONOCYTES_39
130.3
MONOCYTES_40
129.8
MONOCYTES_41
129.2
MONOCYTES_42
129.0
MONOCYTES_43
128.8
MONOCYTES_44
128.3
MONOCYTES_45
127.6
MONOCYTES_46
126.4
MONOCYTES_47
126.3
MONOCYTES_48
124.4
MONOCYTES_49
123.0
MONOCYTES_50
121.4
MONOCYTES_51
120.6
MONOCYTES_52
120.4
MONOCYTES_53
119.6
MONOCYTES_54
119.6
MONOCYTES_55
119.3
MONOCYTES_56
118.8
MONOCYTES_57
118.5
MONOCYTES_58
118.2
MONOCYTES_59
117.5
MONOCYTES_60
117.2
MONOCYTES_61
116.7
MONOCYTES_62
116.5
MONOCYTES_63
116.2
MONOCYTES_64
115.6
MONOCYTES_65
114.7
MONOCYTES_66
114.5
MONOCYTES_67
113.7
MONOCYTES_68
113.2
MONOCYTES_69
112.5
MONOCYTES_70
111.7
MONOCYTES_71
111.5
MONOCYTES_72
110.4
MONOCYTES_73
108.6
MONOCYTES_74
108.2
MONOCYTES_75
107.6
MONOCYTES_76
106.7
MONOCYTES_77
106.1
MONOCYTES_78
104.7
MONOCYTES_79
103.2
MONOCYTES_80
102.8
MONOCYTES_81
100.6
MONOCYTES_82
98.3
MONOCYTES_83
97.9
MONOCYTES_84
97.4
MONOCYTES_85
95.8
MONOCYTES_86
93.6
MONOCYTES_87
90.3
MONOCYTES_88
88.2
MONOCYTES_89
88.0
MONOCYTES_90
86.8
MONOCYTES_91
85.2
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Non-classical monocyte TPM: 278.0
Samples: 90
Max TPM: 378.8
Min TPM: 140.4
M2_1
378.8
M2_2
378.0
M2_3
362.7
M2_4
359.2
M2_5
358.2
M2_6
356.5
M2_7
350.8
M2_8
350.2
M2_9
349.4
M2_10
344.4
M2_11
341.0
M2_12
338.4
M2_13
337.6
M2_14
334.0
M2_15
329.4
M2_16
328.4
M2_17
327.2
M2_18
326.2
M2_19
325.7
M2_20
325.5
M2_21
322.5
M2_22
322.4
M2_23
320.7
M2_24
319.7
M2_25
319.1
M2_26
318.6
M2_27
318.2
M2_28
317.6
M2_29
316.7
M2_30
313.7
M2_31
311.9
M2_32
311.9
M2_33
311.3
M2_34
308.1
M2_35
303.3
M2_36
302.6
M2_37
301.0
M2_38
300.5
M2_39
294.0
M2_40
294.0
M2_41
293.3
M2_42
290.3
M2_43
288.7
M2_44
288.4
M2_45
286.5
M2_46
284.9
M2_47
283.8
M2_48
283.6
M2_49
278.3
M2_50
277.2
M2_51
272.2
M2_52
271.2
M2_53
269.3
M2_54
268.7
M2_55
268.5
M2_56
265.8
M2_57
265.7
M2_58
264.5
M2_59
264.2
M2_60
260.7
M2_61
260.3
M2_62
260.2
M2_63
254.3
M2_64
252.9
M2_65
245.8
M2_66
245.1
M2_67
237.8
M2_68
237.6
M2_69
236.1
M2_70
223.0
M2_71
221.6
M2_72
221.4
M2_73
221.0
M2_74
214.9
M2_75
214.1
M2_76
211.5
M2_77
206.9
M2_78
205.1
M2_79
204.4
M2_80
199.8
M2_81
199.7
M2_82
194.2
M2_83
190.9
M2_84
190.7
M2_85
187.2
M2_86
182.3
M2_87
176.0
M2_88
163.2
M2_89
162.4
M2_90
140.4
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