A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.4
nTPM
Monaco:
95.8
nTPM
Schmiedel:
95.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.4
HPA sample
nTPM
Memory B-cell nTPM: 20.3
Samples: 6
Max nTPM: 27.1
Min nTPM: 6.7
P10809_1017
27.1
P10809_1025
25.1
P10809_1044
6.7
P10809_1063
18.8
P10809_1092
18.3
P10809_1105
25.5
Naive B-cell nTPM: 21.4
Samples: 6
Max nTPM: 24.6
Min nTPM: 16.2
P10809_1011
24.6
P10809_1029
22.7
P10809_1048
16.2
P10809_1067
19.3
P10809_1091
21.2
P10809_1104
24.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 82.2
Samples: 4
Max nTPM: 96.3
Min nTPM: 71.8
RHH5310_R3677
96.3
RHH5218_R3590
79.7
RHH5247_R3619
71.8
RHH5276_R3648
81.1
Naive B-cell nTPM: 75.0
Samples: 4
Max nTPM: 87.6
Min nTPM: 67.8
RHH5308_R3675
67.8
RHH5216_R3588
87.6
RHH5245_R3617
71.7
RHH5274_R3646
73.1
Non-switched memory B-cell nTPM: 90.8
Samples: 4
Max nTPM: 99.1
Min nTPM: 82.1
RHH5309_R3676
99.1
RHH5217_R3589
82.1
RHH5246_R3618
89.8
RHH5275_R3647
92.3
Plasmablast nTPM: 59.7
Samples: 4
Max nTPM: 74.1
Min nTPM: 44.9
RHH5312_R3679
64.3
RHH5220_R3592
74.1
RHH5249_R3621
55.5
RHH5278_R3650
44.9
Switched memory B-cell nTPM: 95.8
Samples: 4
Max nTPM: 118.5
Min nTPM: 76.8
RHH5311_R3678
108.7
RHH5219_R3591
76.8
RHH5248_R3620
118.5
RHH5277_R3649
79.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.6
Schmiedel sample id
TPM
Naive B-cell TPM: 95.6
Samples: 91
Max TPM: 146.6
Min TPM: 28.0
B_CELL_NAIVE_1
146.6
B_CELL_NAIVE_2
146.4
B_CELL_NAIVE_3
142.8
B_CELL_NAIVE_4
139.0
B_CELL_NAIVE_5
138.9
B_CELL_NAIVE_6
138.9
B_CELL_NAIVE_7
134.3
B_CELL_NAIVE_8
133.4
B_CELL_NAIVE_9
133.1
B_CELL_NAIVE_10
132.2
B_CELL_NAIVE_11
131.9
B_CELL_NAIVE_12
131.8
B_CELL_NAIVE_13
131.5
B_CELL_NAIVE_14
129.0
B_CELL_NAIVE_15
129.0
B_CELL_NAIVE_16
127.9
B_CELL_NAIVE_17
127.3
B_CELL_NAIVE_18
123.0
B_CELL_NAIVE_19
122.6
B_CELL_NAIVE_20
121.9
B_CELL_NAIVE_21
121.0
B_CELL_NAIVE_22
120.6
B_CELL_NAIVE_23
120.1
B_CELL_NAIVE_24
117.4
B_CELL_NAIVE_25
115.2
B_CELL_NAIVE_26
113.9
B_CELL_NAIVE_27
113.9
B_CELL_NAIVE_28
113.8
B_CELL_NAIVE_29
112.1
B_CELL_NAIVE_30
111.4
B_CELL_NAIVE_31
111.2
B_CELL_NAIVE_32
111.0
B_CELL_NAIVE_33
109.9
B_CELL_NAIVE_34
109.8
B_CELL_NAIVE_35
108.1
B_CELL_NAIVE_36
107.6
B_CELL_NAIVE_37
107.6
B_CELL_NAIVE_38
107.2
B_CELL_NAIVE_39
106.0
B_CELL_NAIVE_40
103.1
B_CELL_NAIVE_41
102.2
B_CELL_NAIVE_42
101.8
B_CELL_NAIVE_43
101.3
B_CELL_NAIVE_44
101.3
B_CELL_NAIVE_45
100.8
B_CELL_NAIVE_46
99.3
B_CELL_NAIVE_47
95.2
B_CELL_NAIVE_48
94.5
B_CELL_NAIVE_49
93.8
B_CELL_NAIVE_50
93.8
B_CELL_NAIVE_51
93.6
B_CELL_NAIVE_52
92.2
B_CELL_NAIVE_53
92.2
B_CELL_NAIVE_54
92.0
B_CELL_NAIVE_55
89.7
B_CELL_NAIVE_56
89.3
B_CELL_NAIVE_57
86.0
B_CELL_NAIVE_58
85.3
B_CELL_NAIVE_59
84.8
B_CELL_NAIVE_60
84.7
B_CELL_NAIVE_61
83.9
B_CELL_NAIVE_62
83.8
B_CELL_NAIVE_63
82.4
B_CELL_NAIVE_64
82.3
B_CELL_NAIVE_65
79.5
B_CELL_NAIVE_66
79.0
B_CELL_NAIVE_67
78.0
B_CELL_NAIVE_68
77.5
B_CELL_NAIVE_69
76.5
B_CELL_NAIVE_70
73.5
B_CELL_NAIVE_71
72.8
B_CELL_NAIVE_72
72.3
B_CELL_NAIVE_73
70.6
B_CELL_NAIVE_74
69.8
B_CELL_NAIVE_75
69.5
B_CELL_NAIVE_76
66.4
B_CELL_NAIVE_77
65.7
B_CELL_NAIVE_78
63.6
B_CELL_NAIVE_79
62.3
B_CELL_NAIVE_80
57.7
B_CELL_NAIVE_81
56.9
B_CELL_NAIVE_82
56.5
B_CELL_NAIVE_83
46.8
B_CELL_NAIVE_84
46.7
B_CELL_NAIVE_85
45.8
B_CELL_NAIVE_86
39.8
B_CELL_NAIVE_87
38.8
B_CELL_NAIVE_88
32.8
B_CELL_NAIVE_89
32.6
B_CELL_NAIVE_90
29.0
B_CELL_NAIVE_91
28.0
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The Human Protein Atlas project is funded
