A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.9
nTPM
Monaco:
25.9
nTPM
Schmiedel:
24.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.9
HPA sample
nTPM
Classical monocyte nTPM: 7.9
Samples: 6
Max nTPM: 12.8
Min nTPM: 5.0
P10809_1003
12.8
P10809_1020
5.0
P10809_1039
5.3
P10809_1058
7.1
P10809_1080
8.1
P10809_1107
9.2
Intermediate monocyte nTPM: 2.4
Samples: 6
Max nTPM: 4.0
Min nTPM: 1.5
P10809_1004
2.8
P10809_1023
2.6
P10809_1042
1.5
P10809_1061
1.7
P10809_1081
1.6
P10809_1108
4.0
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.7
Min nTPM: 0.1
P10809_1005
0.1
P10809_1053
0.7
P10809_1072
0.1
P10809_1082
0.4
P10809_1109
0.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
Monaco sample
nTPM
Classical monocyte nTPM: 25.9
Samples: 4
Max nTPM: 33.6
Min nTPM: 20.0
RHH5313_R3680
33.6
RHH5221_R3593
28.8
RHH5250_R3622
20.0
RHH5279_R3651
21.2
Intermediate monocyte nTPM: 8.5
Samples: 4
Max nTPM: 9.9
Min nTPM: 6.5
RHH5314_R3681
8.3
RHH5222_R3594
9.1
RHH5251_R3623
9.9
RHH5280_R3652
6.5
Non-classical monocyte nTPM: 3.1
Samples: 4
Max nTPM: 5.1
Min nTPM: 0.7
RHH5315_R3682
4.0
RHH5223_R3595
0.7
RHH5252_R3624
5.1
RHH5281_R3653
2.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Schmiedel sample id
TPM
Classical monocyte TPM: 24.1
Samples: 91
Max TPM: 44.5
Min TPM: 12.1
MONOCYTES_1
44.5
MONOCYTES_2
37.7
MONOCYTES_3
37.5
MONOCYTES_4
36.0
MONOCYTES_5
35.7
MONOCYTES_6
35.3
MONOCYTES_7
33.2
MONOCYTES_8
33.1
MONOCYTES_9
32.5
MONOCYTES_10
32.5
MONOCYTES_11
32.2
MONOCYTES_12
31.5
MONOCYTES_13
31.1
MONOCYTES_14
31.1
MONOCYTES_15
30.9
MONOCYTES_16
30.0
MONOCYTES_17
29.6
MONOCYTES_18
29.3
MONOCYTES_19
28.7
MONOCYTES_20
28.4
MONOCYTES_21
28.3
MONOCYTES_22
28.1
MONOCYTES_23
28.0
MONOCYTES_24
27.4
MONOCYTES_25
27.4
MONOCYTES_26
27.3
MONOCYTES_27
27.1
MONOCYTES_28
27.1
MONOCYTES_29
27.0
MONOCYTES_30
26.8
MONOCYTES_31
26.7
MONOCYTES_32
26.5
MONOCYTES_33
25.3
MONOCYTES_34
25.2
MONOCYTES_35
25.1
MONOCYTES_36
24.9
MONOCYTES_37
24.9
MONOCYTES_38
24.8
MONOCYTES_39
24.8
MONOCYTES_40
24.7
MONOCYTES_41
24.6
MONOCYTES_42
24.2
MONOCYTES_43
24.1
MONOCYTES_44
24.0
MONOCYTES_45
23.7
MONOCYTES_46
23.6
MONOCYTES_47
23.4
MONOCYTES_48
23.3
MONOCYTES_49
23.2
MONOCYTES_50
23.1
MONOCYTES_51
22.5
MONOCYTES_52
22.3
MONOCYTES_53
22.3
MONOCYTES_54
22.1
MONOCYTES_55
22.1
MONOCYTES_56
22.0
MONOCYTES_57
22.0
MONOCYTES_58
21.9
MONOCYTES_59
21.8
MONOCYTES_60
21.5
MONOCYTES_61
21.3
MONOCYTES_62
21.0
MONOCYTES_63
21.0
MONOCYTES_64
20.9
MONOCYTES_65
20.7
MONOCYTES_66
20.5
MONOCYTES_67
20.4
MONOCYTES_68
20.1
MONOCYTES_69
20.1
MONOCYTES_70
20.0
MONOCYTES_71
19.4
MONOCYTES_72
18.9
MONOCYTES_73
18.9
MONOCYTES_74
18.9
MONOCYTES_75
18.6
MONOCYTES_76
18.4
MONOCYTES_77
17.5
MONOCYTES_78
17.2
MONOCYTES_79
16.9
MONOCYTES_80
16.0
MONOCYTES_81
15.9
MONOCYTES_82
15.6
MONOCYTES_83
15.4
MONOCYTES_84
15.0
MONOCYTES_85
14.6
MONOCYTES_86
14.3
MONOCYTES_87
14.0
MONOCYTES_88
13.6
MONOCYTES_89
13.5
MONOCYTES_90
13.1
MONOCYTES_91
12.1
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Non-classical monocyte TPM: 1.4
Samples: 90
Max TPM: 9.0
Min TPM: 0.4
M2_1
9.0
M2_2
4.4
M2_3
3.4
M2_4
2.8
M2_5
2.5
M2_6
2.4
M2_7
2.4
M2_8
2.3
M2_9
2.1
M2_10
2.1
M2_11
2.0
M2_12
1.9
M2_13
1.9
M2_14
1.8
M2_15
1.7
M2_16
1.7
M2_17
1.7
M2_18
1.6
M2_19
1.6
M2_20
1.6
M2_21
1.6
M2_22
1.6
M2_23
1.5
M2_24
1.5
M2_25
1.5
M2_26
1.5
M2_27
1.4
M2_28
1.4
M2_29
1.4
M2_30
1.4
M2_31
1.4
M2_32
1.4
M2_33
1.4
M2_34
1.3
M2_35
1.3
M2_36
1.3
M2_37
1.3
M2_38
1.3
M2_39
1.3
M2_40
1.3
M2_41
1.2
M2_42
1.2
M2_43
1.2
M2_44
1.2
M2_45
1.2
M2_46
1.1
M2_47
1.1
M2_48
1.1
M2_49
1.1
M2_50
1.1
M2_51
1.1
M2_52
1.1
M2_53
1.1
M2_54
1.1
M2_55
1.1
M2_56
1.1
M2_57
1.0
M2_58
1.0
M2_59
1.0
M2_60
1.0
M2_61
1.0
M2_62
1.0
M2_63
1.0
M2_64
1.0
M2_65
0.9
M2_66
0.9
M2_67
0.9
M2_68
0.9
M2_69
0.9
M2_70
0.8
M2_71
0.8
M2_72
0.8
M2_73
0.8
M2_74
0.8
M2_75
0.8
M2_76
0.7
M2_77
0.7
M2_78
0.7
M2_79
0.7
M2_80
0.7
M2_81
0.6
M2_82
0.6
M2_83
0.6
M2_84
0.5
M2_85
0.5
M2_86
0.5
M2_87
0.5
M2_88
0.5
M2_89
0.5
M2_90
0.4
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