A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.6
nTPM
Monaco:
34.9
nTPM
Schmiedel:
46.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.6
HPA sample
nTPM
NK-cell nTPM: 60.6
Samples: 6
Max nTPM: 78.3
Min nTPM: 25.0
P10809_1013
25.0
P10809_1033
78.3
P10809_1052
68.8
P10809_1071
75.0
P10809_1093
47.4
P10809_1103
69.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.9
Monaco sample
nTPM
NK-cell nTPM: 34.9
Samples: 4
Max nTPM: 44.9
Min nTPM: 30.9
RHH5316_R3683
30.9
RHH5224_R3596
44.9
RHH5253_R3625
31.0
RHH5282_R3654
32.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.5
Schmiedel sample id
TPM
NK-cell TPM: 46.5
Samples: 90
Max TPM: 66.9
Min TPM: 29.6
NK_1
66.9
NK_2
66.1
NK_3
64.9
NK_4
63.4
NK_5
61.3
NK_6
60.1
NK_7
59.2
NK_8
59.0
NK_9
58.1
NK_10
58.0
NK_11
57.1
NK_12
55.8
NK_13
55.4
NK_14
55.3
NK_15
54.9
NK_16
54.7
NK_17
54.0
NK_18
53.7
NK_19
53.5
NK_20
53.2
NK_21
53.1
NK_22
53.0
NK_23
52.6
NK_24
52.6
NK_25
52.5
NK_26
52.5
NK_27
52.4
NK_28
52.3
NK_29
52.3
NK_30
51.6
NK_31
51.3
NK_32
51.3
NK_33
50.7
NK_34
50.4
NK_35
49.3
NK_36
49.2
NK_37
48.4
NK_38
48.1
NK_39
48.0
NK_40
47.8
NK_41
47.5
NK_42
46.8
NK_43
46.7
NK_44
46.6
NK_45
46.5
NK_46
46.1
NK_47
45.9
NK_48
45.5
NK_49
45.1
NK_50
43.8
NK_51
43.7
NK_52
43.6
NK_53
43.6
NK_54
42.3
NK_55
42.2
NK_56
42.2
NK_57
41.9
NK_58
41.6
NK_59
41.4
NK_60
41.1
NK_61
40.9
NK_62
40.7
NK_63
40.7
NK_64
40.6
NK_65
40.4
NK_66
39.4
NK_67
39.3
NK_68
38.8
NK_69
38.7
NK_70
38.7
NK_71
38.4
NK_72
38.3
NK_73
38.1
NK_74
37.9
NK_75
37.6
NK_76
37.5
NK_77
37.4
NK_78
37.1
NK_79
36.9
NK_80
36.9
NK_81
36.4
NK_82
35.5
NK_83
35.4
NK_84
35.3
NK_85
35.2
NK_86
34.5
NK_87
34.1
NK_88
33.9
NK_89
30.5
NK_90
29.6
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