A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.6
nTPM
Monaco:
36.0
nTPM
Schmiedel:
32.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
HPA sample
nTPM
Classical monocyte nTPM: 62.8
Samples: 6
Max nTPM: 107.0
Min nTPM: 33.3
P10809_1003
33.3
P10809_1020
66.1
P10809_1039
107.0
P10809_1058
46.8
P10809_1080
68.7
P10809_1107
55.1
Intermediate monocyte nTPM: 70.5
Samples: 6
Max nTPM: 99.8
Min nTPM: 49.8
P10809_1004
49.8
P10809_1023
73.6
P10809_1042
99.8
P10809_1061
57.0
P10809_1081
60.3
P10809_1108
82.7
Non-classical monocyte nTPM: 56.7
Samples: 5
Max nTPM: 80.1
Min nTPM: 35.5
P10809_1005
35.5
P10809_1053
80.1
P10809_1072
51.6
P10809_1082
50.1
P10809_1109
66.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.0
Monaco sample
nTPM
Classical monocyte nTPM: 25.6
Samples: 4
Max nTPM: 37.3
Min nTPM: 14.2
RHH5313_R3680
14.2
RHH5221_R3593
24.0
RHH5250_R3622
26.8
RHH5279_R3651
37.3
Intermediate monocyte nTPM: 36.0
Samples: 4
Max nTPM: 55.3
Min nTPM: 22.6
RHH5314_R3681
55.3
RHH5222_R3594
32.9
RHH5251_R3623
22.6
RHH5280_R3652
33.1
Non-classical monocyte nTPM: 26.5
Samples: 4
Max nTPM: 36.7
Min nTPM: 16.4
RHH5315_R3682
31.3
RHH5223_R3595
36.7
RHH5252_R3624
21.5
RHH5281_R3653
16.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.2
Schmiedel sample id
TPM
Classical monocyte TPM: 20.3
Samples: 91
Max TPM: 25.7
Min TPM: 15.3
MONOCYTES_1
25.7
MONOCYTES_2
24.9
MONOCYTES_3
24.6
MONOCYTES_4
23.7
MONOCYTES_5
23.5
MONOCYTES_6
23.5
MONOCYTES_7
23.5
MONOCYTES_8
23.1
MONOCYTES_9
22.9
MONOCYTES_10
22.6
MONOCYTES_11
22.6
MONOCYTES_12
22.6
MONOCYTES_13
22.5
MONOCYTES_14
22.4
MONOCYTES_15
22.4
MONOCYTES_16
22.3
MONOCYTES_17
22.3
MONOCYTES_18
22.2
MONOCYTES_19
22.1
MONOCYTES_20
21.9
MONOCYTES_21
21.7
MONOCYTES_22
21.6
MONOCYTES_23
21.6
MONOCYTES_24
21.5
MONOCYTES_25
21.5
MONOCYTES_26
21.5
MONOCYTES_27
21.4
MONOCYTES_28
21.4
MONOCYTES_29
21.3
MONOCYTES_30
21.2
MONOCYTES_31
21.2
MONOCYTES_32
21.1
MONOCYTES_33
21.1
MONOCYTES_34
20.8
MONOCYTES_35
20.7
MONOCYTES_36
20.7
MONOCYTES_37
20.7
MONOCYTES_38
20.6
MONOCYTES_39
20.6
MONOCYTES_40
20.5
MONOCYTES_41
20.5
MONOCYTES_42
20.4
MONOCYTES_43
20.3
MONOCYTES_44
20.3
MONOCYTES_45
20.2
MONOCYTES_46
20.2
MONOCYTES_47
20.2
MONOCYTES_48
20.2
MONOCYTES_49
20.2
MONOCYTES_50
20.1
MONOCYTES_51
20.0
MONOCYTES_52
20.0
MONOCYTES_53
20.0
MONOCYTES_54
20.0
MONOCYTES_55
19.9
MONOCYTES_56
19.9
MONOCYTES_57
19.8
MONOCYTES_58
19.8
MONOCYTES_59
19.8
MONOCYTES_60
19.7
MONOCYTES_61
19.7
MONOCYTES_62
19.5
MONOCYTES_63
19.4
MONOCYTES_64
19.2
MONOCYTES_65
19.2
MONOCYTES_66
19.2
MONOCYTES_67
19.0
MONOCYTES_68
19.0
MONOCYTES_69
19.0
MONOCYTES_70
19.0
MONOCYTES_71
18.9
MONOCYTES_72
18.9
MONOCYTES_73
18.9
MONOCYTES_74
18.8
MONOCYTES_75
18.7
MONOCYTES_76
18.6
MONOCYTES_77
18.6
MONOCYTES_78
18.5
MONOCYTES_79
18.5
MONOCYTES_80
18.2
MONOCYTES_81
18.0
MONOCYTES_82
18.0
MONOCYTES_83
17.9
MONOCYTES_84
17.9
MONOCYTES_85
17.8
MONOCYTES_86
17.4
MONOCYTES_87
16.1
MONOCYTES_88
15.9
MONOCYTES_89
15.7
MONOCYTES_90
15.6
MONOCYTES_91
15.3
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Non-classical monocyte TPM: 32.2
Samples: 90
Max TPM: 40.9
Min TPM: 22.9
M2_1
40.9
M2_2
40.4
M2_3
39.2
M2_4
39.2
M2_5
38.3
M2_6
37.8
M2_7
37.6
M2_8
37.5
M2_9
37.5
M2_10
37.4
M2_11
37.2
M2_12
36.4
M2_13
36.4
M2_14
36.3
M2_15
36.3
M2_16
36.1
M2_17
35.9
M2_18
35.8
M2_19
35.5
M2_20
35.5
M2_21
35.4
M2_22
35.3
M2_23
34.9
M2_24
34.8
M2_25
34.7
M2_26
34.7
M2_27
34.6
M2_28
34.1
M2_29
33.9
M2_30
33.7
M2_31
33.6
M2_32
33.6
M2_33
33.4
M2_34
33.3
M2_35
33.2
M2_36
33.1
M2_37
33.0
M2_38
33.0
M2_39
33.0
M2_40
32.8
M2_41
32.8
M2_42
32.6
M2_43
32.5
M2_44
32.5
M2_45
32.5
M2_46
32.2
M2_47
32.2
M2_48
32.1
M2_49
32.0
M2_50
31.8
M2_51
31.7
M2_52
31.7
M2_53
31.7
M2_54
31.4
M2_55
31.4
M2_56
31.0
M2_57
31.0
M2_58
30.9
M2_59
30.9
M2_60
30.9
M2_61
30.7
M2_62
30.5
M2_63
30.4
M2_64
30.4
M2_65
30.3
M2_66
29.4
M2_67
29.4
M2_68
29.3
M2_69
29.2
M2_70
29.2
M2_71
29.1
M2_72
29.1
M2_73
29.0
M2_74
29.0
M2_75
28.7
M2_76
28.5
M2_77
28.5
M2_78
27.9
M2_79
27.6
M2_80
27.4
M2_81
27.1
M2_82
26.8
M2_83
26.7
M2_84
26.0
M2_85
25.9
M2_86
25.1
M2_87
25.0
M2_88
24.5
M2_89
23.5
M2_90
22.9
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