A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
12.3
nTPM
Schmiedel:
45.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Memory B-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1017
0.4
P10809_1025
0.6
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.4
Naive B-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1011
0.7
P10809_1029
0.3
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
0.4
P10809_1104
0.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.2
Samples: 4
Max nTPM: 6.6
Min nTPM: 2.4
RHH5310_R3677
4.1
RHH5218_R3590
6.6
RHH5247_R3619
3.7
RHH5276_R3648
2.4
Naive B-cell nTPM: 12.3
Samples: 4
Max nTPM: 23.1
Min nTPM: 4.4
RHH5308_R3675
13.2
RHH5216_R3588
4.4
RHH5245_R3617
23.1
RHH5274_R3646
8.6
Non-switched memory B-cell nTPM: 9.0
Samples: 4
Max nTPM: 10.6
Min nTPM: 6.2
RHH5309_R3676
10.5
RHH5217_R3589
6.2
RHH5246_R3618
8.6
RHH5275_R3647
10.6
Plasmablast nTPM: 0.8
Samples: 4
Max nTPM: 1.5
Min nTPM: 0.0
RHH5312_R3679
1.3
RHH5220_R3592
1.5
RHH5249_R3621
0.0
RHH5278_R3650
0.2
Switched memory B-cell nTPM: 5.8
Samples: 4
Max nTPM: 8.1
Min nTPM: 3.7
RHH5311_R3678
5.3
RHH5219_R3591
6.1
RHH5248_R3620
3.7
RHH5277_R3649
8.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.0
Schmiedel sample id
TPM
Naive B-cell TPM: 45.0
Samples: 91
Max TPM: 76.1
Min TPM: 28.0
B_CELL_NAIVE_1
76.1
B_CELL_NAIVE_2
67.0
B_CELL_NAIVE_3
64.0
B_CELL_NAIVE_4
58.5
B_CELL_NAIVE_5
58.3
B_CELL_NAIVE_6
57.3
B_CELL_NAIVE_7
55.3
B_CELL_NAIVE_8
55.0
B_CELL_NAIVE_9
53.7
B_CELL_NAIVE_10
53.7
B_CELL_NAIVE_11
53.6
B_CELL_NAIVE_12
53.6
B_CELL_NAIVE_13
53.2
B_CELL_NAIVE_14
53.0
B_CELL_NAIVE_15
52.9
B_CELL_NAIVE_16
52.7
B_CELL_NAIVE_17
52.3
B_CELL_NAIVE_18
52.1
B_CELL_NAIVE_19
51.0
B_CELL_NAIVE_20
50.2
B_CELL_NAIVE_21
50.1
B_CELL_NAIVE_22
49.3
B_CELL_NAIVE_23
49.2
B_CELL_NAIVE_24
49.1
B_CELL_NAIVE_25
49.0
B_CELL_NAIVE_26
48.8
B_CELL_NAIVE_27
48.4
B_CELL_NAIVE_28
47.6
B_CELL_NAIVE_29
47.5
B_CELL_NAIVE_30
47.2
B_CELL_NAIVE_31
47.1
B_CELL_NAIVE_32
46.8
B_CELL_NAIVE_33
46.8
B_CELL_NAIVE_34
46.8
B_CELL_NAIVE_35
46.4
B_CELL_NAIVE_36
46.3
B_CELL_NAIVE_37
45.8
B_CELL_NAIVE_38
45.6
B_CELL_NAIVE_39
45.6
B_CELL_NAIVE_40
45.5
B_CELL_NAIVE_41
45.4
B_CELL_NAIVE_42
45.4
B_CELL_NAIVE_43
45.2
B_CELL_NAIVE_44
45.1
B_CELL_NAIVE_45
44.9
B_CELL_NAIVE_46
44.7
B_CELL_NAIVE_47
44.4
B_CELL_NAIVE_48
44.3
B_CELL_NAIVE_49
44.2
B_CELL_NAIVE_50
44.0
B_CELL_NAIVE_51
43.6
B_CELL_NAIVE_52
43.6
B_CELL_NAIVE_53
43.4
B_CELL_NAIVE_54
43.0
B_CELL_NAIVE_55
42.8
B_CELL_NAIVE_56
42.4
B_CELL_NAIVE_57
42.3
B_CELL_NAIVE_58
41.3
B_CELL_NAIVE_59
41.3
B_CELL_NAIVE_60
41.2
B_CELL_NAIVE_61
40.9
B_CELL_NAIVE_62
40.2
B_CELL_NAIVE_63
40.2
B_CELL_NAIVE_64
40.1
B_CELL_NAIVE_65
40.1
B_CELL_NAIVE_66
39.9
B_CELL_NAIVE_67
39.8
B_CELL_NAIVE_68
39.8
B_CELL_NAIVE_69
39.7
B_CELL_NAIVE_70
39.5
B_CELL_NAIVE_71
39.5
B_CELL_NAIVE_72
39.1
B_CELL_NAIVE_73
38.6
B_CELL_NAIVE_74
38.5
B_CELL_NAIVE_75
38.5
B_CELL_NAIVE_76
38.2
B_CELL_NAIVE_77
38.1
B_CELL_NAIVE_78
38.1
B_CELL_NAIVE_79
36.7
B_CELL_NAIVE_80
36.6
B_CELL_NAIVE_81
36.4
B_CELL_NAIVE_82
36.1
B_CELL_NAIVE_83
35.7
B_CELL_NAIVE_84
35.1
B_CELL_NAIVE_85
35.0
B_CELL_NAIVE_86
34.9
B_CELL_NAIVE_87
33.7
B_CELL_NAIVE_88
33.3
B_CELL_NAIVE_89
32.5
B_CELL_NAIVE_90
29.0
B_CELL_NAIVE_91
28.0
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The Human Protein Atlas project is funded
