A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
26.9
nTPM
Schmiedel:
65.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.2
P10809_1003
0.5
P10809_1020
1.0
P10809_1039
2.6
P10809_1058
0.2
P10809_1080
0.3
P10809_1107
0.6
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.0
P10809_1004
2.1
P10809_1023
0.0
P10809_1042
1.5
P10809_1061
0.0
P10809_1081
0.3
P10809_1108
0.6
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 4.0
Min nTPM: 0.0
P10809_1005
4.0
P10809_1053
0.9
P10809_1072
0.0
P10809_1082
1.1
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
Monaco sample
nTPM
Classical monocyte nTPM: 10.1
Samples: 4
Max nTPM: 12.2
Min nTPM: 7.5
RHH5313_R3680
9.6
RHH5221_R3593
10.9
RHH5250_R3622
7.5
RHH5279_R3651
12.2
Intermediate monocyte nTPM: 24.7
Samples: 4
Max nTPM: 35.5
Min nTPM: 13.4
RHH5314_R3681
23.8
RHH5222_R3594
26.1
RHH5251_R3623
35.5
RHH5280_R3652
13.4
Non-classical monocyte nTPM: 26.9
Samples: 4
Max nTPM: 33.3
Min nTPM: 14.1
RHH5315_R3682
30.0
RHH5223_R3595
33.3
RHH5252_R3624
30.1
RHH5281_R3653
14.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.7
Schmiedel sample id
TPM
Classical monocyte TPM: 21.3
Samples: 91
Max TPM: 28.2
Min TPM: 16.3
MONOCYTES_1
28.2
MONOCYTES_2
27.7
MONOCYTES_3
25.7
MONOCYTES_4
25.7
MONOCYTES_5
25.3
MONOCYTES_6
25.3
MONOCYTES_7
25.2
MONOCYTES_8
25.0
MONOCYTES_9
24.9
MONOCYTES_10
24.7
MONOCYTES_11
24.7
MONOCYTES_12
24.7
MONOCYTES_13
24.3
MONOCYTES_14
24.2
MONOCYTES_15
24.0
MONOCYTES_16
24.0
MONOCYTES_17
23.5
MONOCYTES_18
23.4
MONOCYTES_19
23.4
MONOCYTES_20
23.3
MONOCYTES_21
23.3
MONOCYTES_22
23.2
MONOCYTES_23
23.0
MONOCYTES_24
23.0
MONOCYTES_25
22.9
MONOCYTES_26
22.8
MONOCYTES_27
22.7
MONOCYTES_28
22.6
MONOCYTES_29
22.6
MONOCYTES_30
22.5
MONOCYTES_31
22.4
MONOCYTES_32
22.1
MONOCYTES_33
22.0
MONOCYTES_34
21.9
MONOCYTES_35
21.9
MONOCYTES_36
21.8
MONOCYTES_37
21.8
MONOCYTES_38
21.7
MONOCYTES_39
21.7
MONOCYTES_40
21.7
MONOCYTES_41
21.5
MONOCYTES_42
21.5
MONOCYTES_43
21.4
MONOCYTES_44
21.3
MONOCYTES_45
21.3
MONOCYTES_46
21.3
MONOCYTES_47
21.1
MONOCYTES_48
21.0
MONOCYTES_49
21.0
MONOCYTES_50
20.9
MONOCYTES_51
20.7
MONOCYTES_52
20.7
MONOCYTES_53
20.7
MONOCYTES_54
20.7
MONOCYTES_55
20.4
MONOCYTES_56
20.4
MONOCYTES_57
20.3
MONOCYTES_58
20.2
MONOCYTES_59
20.1
MONOCYTES_60
20.1
MONOCYTES_61
20.1
MONOCYTES_62
20.0
MONOCYTES_63
20.0
MONOCYTES_64
20.0
MONOCYTES_65
19.9
MONOCYTES_66
19.7
MONOCYTES_67
19.7
MONOCYTES_68
19.6
MONOCYTES_69
19.5
MONOCYTES_70
19.5
MONOCYTES_71
19.3
MONOCYTES_72
19.3
MONOCYTES_73
19.2
MONOCYTES_74
18.9
MONOCYTES_75
18.7
MONOCYTES_76
18.7
MONOCYTES_77
18.5
MONOCYTES_78
18.5
MONOCYTES_79
18.5
MONOCYTES_80
18.4
MONOCYTES_81
18.1
MONOCYTES_82
17.9
MONOCYTES_83
17.8
MONOCYTES_84
17.8
MONOCYTES_85
17.8
MONOCYTES_86
17.6
MONOCYTES_87
17.4
MONOCYTES_88
17.3
MONOCYTES_89
16.8
MONOCYTES_90
16.8
MONOCYTES_91
16.3
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Non-classical monocyte TPM: 65.7
Samples: 90
Max TPM: 97.2
Min TPM: 47.1
M2_1
97.2
M2_2
87.6
M2_3
80.9
M2_4
80.7
M2_5
80.0
M2_6
79.0
M2_7
77.0
M2_8
76.2
M2_9
76.0
M2_10
75.9
M2_11
74.0
M2_12
73.8
M2_13
73.4
M2_14
73.0
M2_15
72.1
M2_16
72.0
M2_17
71.9
M2_18
71.9
M2_19
71.8
M2_20
71.8
M2_21
71.7
M2_22
71.6
M2_23
71.5
M2_24
71.0
M2_25
71.0
M2_26
70.7
M2_27
69.6
M2_28
69.2
M2_29
68.7
M2_30
68.6
M2_31
68.5
M2_32
68.1
M2_33
68.0
M2_34
67.9
M2_35
67.6
M2_36
67.2
M2_37
67.2
M2_38
67.2
M2_39
67.1
M2_40
66.8
M2_41
66.7
M2_42
66.3
M2_43
66.1
M2_44
66.0
M2_45
65.6
M2_46
65.5
M2_47
65.3
M2_48
64.9
M2_49
64.7
M2_50
64.7
M2_51
64.4
M2_52
63.7
M2_53
63.2
M2_54
63.0
M2_55
62.6
M2_56
62.5
M2_57
62.5
M2_58
62.4
M2_59
62.3
M2_60
62.1
M2_61
62.0
M2_62
61.7
M2_63
61.7
M2_64
61.2
M2_65
61.1
M2_66
61.0
M2_67
60.8
M2_68
60.3
M2_69
60.2
M2_70
59.6
M2_71
59.2
M2_72
59.2
M2_73
59.1
M2_74
58.1
M2_75
57.9
M2_76
57.3
M2_77
57.2
M2_78
57.2
M2_79
56.8
M2_80
56.8
M2_81
56.3
M2_82
54.8
M2_83
53.5
M2_84
52.8
M2_85
52.4
M2_86
52.2
M2_87
51.3
M2_88
51.3
M2_89
50.3
M2_90
47.1
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