We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.9
Sample id
Sample description
nTPM
Amygdala nTPM: 49.7
2814
Male, age 76, right hemisphere
72.8
2695
Female, age 67, right hemisphere
53.7
2514
Male, age 75, right hemisphere
46.3
2517
Female, age 94, left hemisphere
38.9
1987
Female, age 91, left hemisphere
36.9
Basal amygdala nTPM: 43.2
1955
Male, age 76, both hemispheres
52.3
2609
Male, age 75, right hemisphere
47.1
2110
Male, age 80, left hemisphere
41.4
2827
Female, age 67, right hemisphere
40.3
2243
Female, age 91, right hemisphere
39.6
2685
Female, age 94, left hemisphere
38.6
Central amygdala nTPM: 47.2
1905
Male, age 76, both hemispheres
66.9
2826
Female, age 94, left hemisphere
50.4
2515
Male, age 75, right hemisphere
44.8
2239
Male, age 80, left hemisphere
37.8
2701
Female, age 91, right hemisphere
36.2
Corticomedial amygdala nTPM: 39.6
2240
Male, age 76, both hemispheres
51.5
2428
Male, age 75, right hemisphere
45.7
2829
Male, age 80, left hemisphere
43.7
2429
Female, age 94, left hemisphere
38.2
2535
Female, age 67, right hemisphere
30.1
2242
Female, age 91, right hemisphere
28.5
Lateral amygdala nTPM: 50.9
2830
Female, age 67, right hemisphere
61.7
1883
Male, age 76, both hemispheres
61.5
2534
Female, age 94, left hemisphere
55.7
2516
Male, age 75, right hemisphere
54.9
2256
Male, age 80, left hemisphere
38.2
2255
Female, age 91, right hemisphere
33.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 10.9
Samples: 181
Max nTPM: 25.4
Min nTPM: 4.2
Std nTPM: 3.5
Median nTPM: 10.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
25.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
23.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
19.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
19.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
18.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
18.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
18.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
18.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
18.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
17.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
17.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
16.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
16.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
15.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
15.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
15.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
15.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
15.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
15.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
15.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
15.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
15.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
14.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
14.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
14.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
14.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
14.4
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
14.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
14.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
14.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
13.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
13.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
13.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
13.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
13.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
13.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
13.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
13.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
13.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
13.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
13.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
13.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
13.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
13.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
13.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
13.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
13.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
12.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
12.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
12.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
12.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
12.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
12.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
12.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
12.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
12.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
12.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
12.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
12.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
12.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
12.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
12.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
11.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
11.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
11.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
11.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
11.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
11.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
11.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
11.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
11.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
11.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
11.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
11.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
11.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
11.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
11.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
11.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
11.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
10.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
10.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
10.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
10.9
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
10.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
10.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
10.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
10.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
10.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
10.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
10.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
10.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
10.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
10.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
10.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
10.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
10.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
10.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
9.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
9.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
9.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
9.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
9.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
9.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
9.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
9.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
9.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
9.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
9.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
9.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
9.3
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
9.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
9.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
9.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
9.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
9.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
9.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
9.1
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
9.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
8.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8.9
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
8.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
8.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
8.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
8.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
8.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
8.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
8.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
8.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
8.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
8.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
8.4
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
8.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
8.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
8.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
8.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
8.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
8.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
8.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
8.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
8.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
8.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
7.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
7.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
7.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
7.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
7.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
7.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
7.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
7.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
7.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
7.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
7.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
7.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
7.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
7.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
7.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
7.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
7.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
7.0
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
7.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
6.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
6.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
6.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
6.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
6.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
6.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
6.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
6.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
6.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
5.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
5.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
5.6
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
5.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
5.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
5.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
5.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
5.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
5.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
4.2
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.6
Pig sample
Sample description
nTPM
Amygdala nTPM: 37.6
Samples: 4
Max nTPM: 55.3
Min nTPM: 27.7
Sample A
Female
55.3
Sample B
Female
27.7
Sample C
Male
33.1
Sample D
Male
34.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 92.4
Samples: 4
Max nTPM: 96.5
Min nTPM: 88.2
Sample A
Male
93.7
Sample B
Male
91.0
Sample C
Female
96.5
Sample D
Female
88.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
