A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
84.3
nTPM
Monaco:
181.6
nTPM
Schmiedel:
21.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.3
HPA sample
nTPM
Classical monocyte nTPM: 70.4
Samples: 6
Max nTPM: 80.1
Min nTPM: 53.0
P10809_1003
80.1
P10809_1020
79.7
P10809_1039
79.5
P10809_1058
53.0
P10809_1080
76.9
P10809_1107
53.2
Intermediate monocyte nTPM: 84.3
Samples: 6
Max nTPM: 102.6
Min nTPM: 65.7
P10809_1004
74.8
P10809_1023
102.6
P10809_1042
100.8
P10809_1061
94.7
P10809_1081
65.7
P10809_1108
67.4
Non-classical monocyte nTPM: 74.2
Samples: 5
Max nTPM: 123.3
Min nTPM: 41.8
P10809_1005
61.6
P10809_1053
84.1
P10809_1072
123.3
P10809_1082
41.8
P10809_1109
60.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.6
Monaco sample
nTPM
Classical monocyte nTPM: 178.4
Samples: 4
Max nTPM: 236.5
Min nTPM: 147.9
RHH5313_R3680
154.4
RHH5221_R3593
236.5
RHH5250_R3622
147.9
RHH5279_R3651
174.6
Intermediate monocyte nTPM: 181.6
Samples: 4
Max nTPM: 239.9
Min nTPM: 133.4
RHH5314_R3681
161.1
RHH5222_R3594
239.9
RHH5251_R3623
133.4
RHH5280_R3652
192.1
Non-classical monocyte nTPM: 145.6
Samples: 4
Max nTPM: 170.8
Min nTPM: 112.3
RHH5315_R3682
137.9
RHH5223_R3595
161.3
RHH5252_R3624
170.8
RHH5281_R3653
112.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.5
Schmiedel sample id
TPM
Classical monocyte TPM: 21.5
Samples: 91
Max TPM: 26.9
Min TPM: 14.7
MONOCYTES_1
26.9
MONOCYTES_2
26.3
MONOCYTES_3
26.3
MONOCYTES_4
26.0
MONOCYTES_5
25.9
MONOCYTES_6
25.7
MONOCYTES_7
25.5
MONOCYTES_8
25.3
MONOCYTES_9
25.3
MONOCYTES_10
25.2
MONOCYTES_11
24.8
MONOCYTES_12
24.2
MONOCYTES_13
24.2
MONOCYTES_14
24.0
MONOCYTES_15
23.9
MONOCYTES_16
23.9
MONOCYTES_17
23.9
MONOCYTES_18
23.8
MONOCYTES_19
23.8
MONOCYTES_20
23.8
MONOCYTES_21
23.6
MONOCYTES_22
23.6
MONOCYTES_23
23.5
MONOCYTES_24
23.5
MONOCYTES_25
23.4
MONOCYTES_26
23.4
MONOCYTES_27
23.1
MONOCYTES_28
23.0
MONOCYTES_29
22.9
MONOCYTES_30
22.8
MONOCYTES_31
22.7
MONOCYTES_32
22.7
MONOCYTES_33
22.5
MONOCYTES_34
22.5
MONOCYTES_35
22.4
MONOCYTES_36
22.4
MONOCYTES_37
22.2
MONOCYTES_38
22.2
MONOCYTES_39
22.1
MONOCYTES_40
22.0
MONOCYTES_41
21.8
MONOCYTES_42
21.8
MONOCYTES_43
21.7
MONOCYTES_44
21.7
MONOCYTES_45
21.7
MONOCYTES_46
21.7
MONOCYTES_47
21.5
MONOCYTES_48
21.5
MONOCYTES_49
21.5
MONOCYTES_50
21.5
MONOCYTES_51
21.5
MONOCYTES_52
21.4
MONOCYTES_53
21.4
MONOCYTES_54
21.2
MONOCYTES_55
21.2
MONOCYTES_56
21.1
MONOCYTES_57
21.1
MONOCYTES_58
20.8
MONOCYTES_59
20.8
MONOCYTES_60
20.7
MONOCYTES_61
20.6
MONOCYTES_62
20.6
MONOCYTES_63
20.6
MONOCYTES_64
20.4
MONOCYTES_65
20.4
MONOCYTES_66
20.2
MONOCYTES_67
20.1
MONOCYTES_68
20.0
MONOCYTES_69
19.8
MONOCYTES_70
19.8
MONOCYTES_71
19.5
MONOCYTES_72
19.5
MONOCYTES_73
19.4
MONOCYTES_74
19.4
MONOCYTES_75
19.2
MONOCYTES_76
19.0
MONOCYTES_77
19.0
MONOCYTES_78
18.7
MONOCYTES_79
18.6
MONOCYTES_80
17.6
MONOCYTES_81
17.3
MONOCYTES_82
17.1
MONOCYTES_83
17.0
MONOCYTES_84
16.9
MONOCYTES_85
16.7
MONOCYTES_86
16.6
MONOCYTES_87
16.5
MONOCYTES_88
16.5
MONOCYTES_89
16.4
MONOCYTES_90
15.8
MONOCYTES_91
14.7
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Non-classical monocyte TPM: 21.2
Samples: 90
Max TPM: 28.2
Min TPM: 13.1
M2_1
28.2
M2_2
27.2
M2_3
26.7
M2_4
26.6
M2_5
26.4
M2_6
25.8
M2_7
25.6
M2_8
25.4
M2_9
25.2
M2_10
24.9
M2_11
24.7
M2_12
24.4
M2_13
24.3
M2_14
24.3
M2_15
24.2
M2_16
24.1
M2_17
24.1
M2_18
24.0
M2_19
23.9
M2_20
23.9
M2_21
23.8
M2_22
23.8
M2_23
23.6
M2_24
23.6
M2_25
23.6
M2_26
23.3
M2_27
23.2
M2_28
23.2
M2_29
23.0
M2_30
22.8
M2_31
22.8
M2_32
22.8
M2_33
22.7
M2_34
22.7
M2_35
22.7
M2_36
22.5
M2_37
22.5
M2_38
22.4
M2_39
22.4
M2_40
22.3
M2_41
22.2
M2_42
22.2
M2_43
21.7
M2_44
21.6
M2_45
21.6
M2_46
21.4
M2_47
21.3
M2_48
21.2
M2_49
21.2
M2_50
21.1
M2_51
21.1
M2_52
20.8
M2_53
20.7
M2_54
20.5
M2_55
20.4
M2_56
20.4
M2_57
20.3
M2_58
20.3
M2_59
20.2
M2_60
20.1
M2_61
19.7
M2_62
19.5
M2_63
19.5
M2_64
19.4
M2_65
19.2
M2_66
19.1
M2_67
19.1
M2_68
19.0
M2_69
18.9
M2_70
18.9
M2_71
18.7
M2_72
18.5
M2_73
18.4
M2_74
18.1
M2_75
18.0
M2_76
18.0
M2_77
17.4
M2_78
17.2
M2_79
17.1
M2_80
17.1
M2_81
16.9
M2_82
16.7
M2_83
16.6
M2_84
16.4
M2_85
16.0
M2_86
15.2
M2_87
13.9
M2_88
13.5
M2_89
13.3
M2_90
13.1
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