A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.1
nTPM
Monaco:
156.5
nTPM
Schmiedel:
87.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.1
HPA sample
nTPM
Memory B-cell nTPM: 27.2
Samples: 6
Max nTPM: 39.7
Min nTPM: 20.7
P10809_1017
21.9
P10809_1025
20.7
P10809_1044
39.7
P10809_1063
33.9
P10809_1092
24.6
P10809_1105
22.2
Naive B-cell nTPM: 32.1
Samples: 6
Max nTPM: 39.6
Min nTPM: 21.3
P10809_1011
24.3
P10809_1029
39.5
P10809_1048
39.6
P10809_1067
37.0
P10809_1091
31.1
P10809_1104
21.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 111.4
Samples: 4
Max nTPM: 130.0
Min nTPM: 89.9
RHH5310_R3677
89.9
RHH5218_R3590
112.0
RHH5247_R3619
130.0
RHH5276_R3648
113.7
Naive B-cell nTPM: 156.6
Samples: 4
Max nTPM: 188.1
Min nTPM: 135.3
RHH5308_R3675
137.3
RHH5216_R3588
188.1
RHH5245_R3617
165.6
RHH5274_R3646
135.3
Non-switched memory B-cell nTPM: 120.7
Samples: 4
Max nTPM: 145.9
Min nTPM: 97.7
RHH5309_R3676
97.7
RHH5217_R3589
145.9
RHH5246_R3618
118.6
RHH5275_R3647
120.6
Plasmablast nTPM: 98.6
Samples: 4
Max nTPM: 122.2
Min nTPM: 66.5
RHH5312_R3679
122.2
RHH5220_R3592
66.5
RHH5249_R3621
101.6
RHH5278_R3650
104.0
Switched memory B-cell nTPM: 128.0
Samples: 4
Max nTPM: 141.3
Min nTPM: 102.0
RHH5311_R3678
102.0
RHH5219_R3591
127.4
RHH5248_R3620
141.3
RHH5277_R3649
141.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.7
Schmiedel sample id
TPM
Naive B-cell TPM: 87.7
Samples: 91
Max TPM: 121.0
Min TPM: 56.9
B_CELL_NAIVE_1
121.0
B_CELL_NAIVE_2
113.7
B_CELL_NAIVE_3
109.1
B_CELL_NAIVE_4
106.4
B_CELL_NAIVE_5
102.1
B_CELL_NAIVE_6
101.9
B_CELL_NAIVE_7
101.0
B_CELL_NAIVE_8
100.0
B_CELL_NAIVE_9
99.8
B_CELL_NAIVE_10
99.2
B_CELL_NAIVE_11
98.5
B_CELL_NAIVE_12
97.8
B_CELL_NAIVE_13
96.0
B_CELL_NAIVE_14
95.9
B_CELL_NAIVE_15
95.8
B_CELL_NAIVE_16
95.8
B_CELL_NAIVE_17
95.4
B_CELL_NAIVE_18
95.1
B_CELL_NAIVE_19
95.0
B_CELL_NAIVE_20
94.9
B_CELL_NAIVE_21
94.7
B_CELL_NAIVE_22
94.1
B_CELL_NAIVE_23
93.8
B_CELL_NAIVE_24
93.8
B_CELL_NAIVE_25
93.8
B_CELL_NAIVE_26
93.7
B_CELL_NAIVE_27
93.3
B_CELL_NAIVE_28
93.3
B_CELL_NAIVE_29
92.5
B_CELL_NAIVE_30
92.0
B_CELL_NAIVE_31
91.6
B_CELL_NAIVE_32
91.5
B_CELL_NAIVE_33
91.4
B_CELL_NAIVE_34
91.1
B_CELL_NAIVE_35
90.5
B_CELL_NAIVE_36
90.2
B_CELL_NAIVE_37
90.1
B_CELL_NAIVE_38
90.1
B_CELL_NAIVE_39
90.0
B_CELL_NAIVE_40
89.9
B_CELL_NAIVE_41
89.6
B_CELL_NAIVE_42
89.0
B_CELL_NAIVE_43
88.9
B_CELL_NAIVE_44
88.9
B_CELL_NAIVE_45
88.7
B_CELL_NAIVE_46
88.0
B_CELL_NAIVE_47
87.7
B_CELL_NAIVE_48
86.7
B_CELL_NAIVE_49
86.5
B_CELL_NAIVE_50
86.4
B_CELL_NAIVE_51
86.3
B_CELL_NAIVE_52
86.1
B_CELL_NAIVE_53
86.0
B_CELL_NAIVE_54
85.5
B_CELL_NAIVE_55
85.4
B_CELL_NAIVE_56
85.4
B_CELL_NAIVE_57
85.2
B_CELL_NAIVE_58
85.1
B_CELL_NAIVE_59
85.1
B_CELL_NAIVE_60
83.8
B_CELL_NAIVE_61
83.7
B_CELL_NAIVE_62
83.2
B_CELL_NAIVE_63
82.9
B_CELL_NAIVE_64
82.9
B_CELL_NAIVE_65
82.7
B_CELL_NAIVE_66
82.6
B_CELL_NAIVE_67
82.4
B_CELL_NAIVE_68
82.3
B_CELL_NAIVE_69
81.5
B_CELL_NAIVE_70
81.2
B_CELL_NAIVE_71
80.6
B_CELL_NAIVE_72
80.5
B_CELL_NAIVE_73
80.1
B_CELL_NAIVE_74
79.4
B_CELL_NAIVE_75
78.7
B_CELL_NAIVE_76
78.4
B_CELL_NAIVE_77
77.7
B_CELL_NAIVE_78
77.1
B_CELL_NAIVE_79
76.7
B_CELL_NAIVE_80
76.6
B_CELL_NAIVE_81
76.0
B_CELL_NAIVE_82
75.6
B_CELL_NAIVE_83
74.6
B_CELL_NAIVE_84
74.6
B_CELL_NAIVE_85
73.4
B_CELL_NAIVE_86
73.2
B_CELL_NAIVE_87
70.5
B_CELL_NAIVE_88
70.3
B_CELL_NAIVE_89
68.9
B_CELL_NAIVE_90
66.6
B_CELL_NAIVE_91
56.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
