A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.1
nTPM
Monaco:
147.4
nTPM
Schmiedel:
58.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.1
HPA sample
nTPM
Classical monocyte nTPM: 21.8
Samples: 6
Max nTPM: 26.6
Min nTPM: 17.4
P10809_1003
26.6
P10809_1020
21.9
P10809_1039
21.0
P10809_1058
20.7
P10809_1080
23.5
P10809_1107
17.4
Intermediate monocyte nTPM: 25.0
Samples: 6
Max nTPM: 28.9
Min nTPM: 17.5
P10809_1004
28.9
P10809_1023
17.5
P10809_1042
27.7
P10809_1061
27.4
P10809_1081
26.1
P10809_1108
22.6
Non-classical monocyte nTPM: 29.1
Samples: 5
Max nTPM: 35.4
Min nTPM: 26.4
P10809_1005
26.4
P10809_1053
35.4
P10809_1072
26.9
P10809_1082
30.4
P10809_1109
26.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.4
Monaco sample
nTPM
Classical monocyte nTPM: 114.2
Samples: 4
Max nTPM: 143.9
Min nTPM: 95.6
RHH5313_R3680
143.9
RHH5221_R3593
95.6
RHH5250_R3622
108.0
RHH5279_R3651
109.3
Intermediate monocyte nTPM: 122.4
Samples: 4
Max nTPM: 142.1
Min nTPM: 112.2
RHH5314_R3681
114.7
RHH5222_R3594
142.1
RHH5251_R3623
112.2
RHH5280_R3652
120.6
Non-classical monocyte nTPM: 147.4
Samples: 4
Max nTPM: 161.2
Min nTPM: 136.6
RHH5315_R3682
152.8
RHH5223_R3595
136.6
RHH5252_R3624
139.1
RHH5281_R3653
161.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.4
Schmiedel sample id
TPM
Classical monocyte TPM: 35.4
Samples: 91
Max TPM: 45.8
Min TPM: 28.8
MONOCYTES_1
45.8
MONOCYTES_2
43.0
MONOCYTES_3
42.9
MONOCYTES_4
41.7
MONOCYTES_5
41.7
MONOCYTES_6
41.6
MONOCYTES_7
41.4
MONOCYTES_8
41.3
MONOCYTES_9
41.2
MONOCYTES_10
40.9
MONOCYTES_11
40.8
MONOCYTES_12
40.5
MONOCYTES_13
40.5
MONOCYTES_14
39.9
MONOCYTES_15
39.9
MONOCYTES_16
39.8
MONOCYTES_17
39.7
MONOCYTES_18
39.2
MONOCYTES_19
39.0
MONOCYTES_20
39.0
MONOCYTES_21
38.8
MONOCYTES_22
37.9
MONOCYTES_23
37.7
MONOCYTES_24
37.3
MONOCYTES_25
37.2
MONOCYTES_26
37.0
MONOCYTES_27
37.0
MONOCYTES_28
36.9
MONOCYTES_29
36.6
MONOCYTES_30
36.4
MONOCYTES_31
36.2
MONOCYTES_32
36.0
MONOCYTES_33
36.0
MONOCYTES_34
35.9
MONOCYTES_35
35.8
MONOCYTES_36
35.5
MONOCYTES_37
35.3
MONOCYTES_38
35.3
MONOCYTES_39
35.3
MONOCYTES_40
35.3
MONOCYTES_41
35.2
MONOCYTES_42
35.1
MONOCYTES_43
34.8
MONOCYTES_44
34.8
MONOCYTES_45
34.6
MONOCYTES_46
34.5
MONOCYTES_47
34.4
MONOCYTES_48
34.4
MONOCYTES_49
34.3
MONOCYTES_50
34.3
MONOCYTES_51
34.2
MONOCYTES_52
34.1
MONOCYTES_53
34.1
MONOCYTES_54
34.0
MONOCYTES_55
33.9
MONOCYTES_56
33.8
MONOCYTES_57
33.7
MONOCYTES_58
33.7
MONOCYTES_59
33.6
MONOCYTES_60
33.6
MONOCYTES_61
33.5
MONOCYTES_62
33.4
MONOCYTES_63
33.3
MONOCYTES_64
33.3
MONOCYTES_65
33.2
MONOCYTES_66
33.2
MONOCYTES_67
33.1
MONOCYTES_68
33.0
MONOCYTES_69
32.7
MONOCYTES_70
32.7
MONOCYTES_71
32.6
MONOCYTES_72
32.5
MONOCYTES_73
32.3
MONOCYTES_74
32.3
MONOCYTES_75
32.2
MONOCYTES_76
32.1
MONOCYTES_77
32.1
MONOCYTES_78
32.1
MONOCYTES_79
32.1
MONOCYTES_80
31.9
MONOCYTES_81
31.8
MONOCYTES_82
31.6
MONOCYTES_83
31.3
MONOCYTES_84
31.1
MONOCYTES_85
31.1
MONOCYTES_86
30.9
MONOCYTES_87
30.4
MONOCYTES_88
30.1
MONOCYTES_89
29.7
MONOCYTES_90
29.0
MONOCYTES_91
28.8
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Non-classical monocyte TPM: 58.4
Samples: 90
Max TPM: 79.0
Min TPM: 41.4
M2_1
79.0
M2_2
76.2
M2_3
76.0
M2_4
72.4
M2_5
72.2
M2_6
71.4
M2_7
71.0
M2_8
70.2
M2_9
70.0
M2_10
69.7
M2_11
69.5
M2_12
69.0
M2_13
68.7
M2_14
68.4
M2_15
68.2
M2_16
66.9
M2_17
65.8
M2_18
65.2
M2_19
64.3
M2_20
64.2
M2_21
63.5
M2_22
63.2
M2_23
63.1
M2_24
62.1
M2_25
61.9
M2_26
61.7
M2_27
61.5
M2_28
61.3
M2_29
60.7
M2_30
60.4
M2_31
60.4
M2_32
60.3
M2_33
60.1
M2_34
59.9
M2_35
59.9
M2_36
59.4
M2_37
59.2
M2_38
58.5
M2_39
57.9
M2_40
57.9
M2_41
57.9
M2_42
57.8
M2_43
57.6
M2_44
57.3
M2_45
56.9
M2_46
56.6
M2_47
56.3
M2_48
56.3
M2_49
56.2
M2_50
56.1
M2_51
56.1
M2_52
55.9
M2_53
55.6
M2_54
55.2
M2_55
55.2
M2_56
55.2
M2_57
55.1
M2_58
55.1
M2_59
55.0
M2_60
55.0
M2_61
54.4
M2_62
54.2
M2_63
54.2
M2_64
54.1
M2_65
53.9
M2_66
53.8
M2_67
53.6
M2_68
53.2
M2_69
53.0
M2_70
52.9
M2_71
52.5
M2_72
52.5
M2_73
52.2
M2_74
51.9
M2_75
51.6
M2_76
51.4
M2_77
51.3
M2_78
50.7
M2_79
50.6
M2_80
49.6
M2_81
49.4
M2_82
48.9
M2_83
48.7
M2_84
48.7
M2_85
48.2
M2_86
46.9
M2_87
46.8
M2_88
46.4
M2_89
42.3
M2_90
41.4
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