HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:76.2 nTPM
HPA Brain:224.2 nTPM
GTEx:76.2 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:308.9 nTPM
Allen mouse:17.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042122Antibody HPA042770
Glial cells Not detectedNot detected
Neuronal cells HighNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 224.2
Sample id Sample description nTPM
Hippocampus
nTPM: 191.8
1898 Male, age 80, left hemisphere 225.4
2621 Female, age 67, right hemisphere 215.8
1855 Male, age 76, left hemisphere 184.7
2148 Female, age 91, left hemisphere 182.0
2529 Female, age 94, left hemisphere 175.8
1911 Female, age 85, right hemisphere 167.2
Dentate gyrus
nTPM: 173.9
2530 Female, age 94, left hemisphere 199.0
2531 Female, age 67, both hemispheres 185.2
1927 Female, age 91, both hemispheres 178.6
2010 Male, age 76, both hemispheres 177.4
2246 Female, age 85, both hemispheres 171.0
2528 Male, age 74, both hemispheres 132.2
Entorhinal gyrus
nTPM: 216.7
1787 Male, age 76, left hemisphere 250.3
2613 Female, age 94, left hemisphere 234.0
1938 Female, age 85, left hemisphere 231.5
2764 Male, age 80, right hemisphere 228.9
2686 Male, age 75, right hemisphere 211.3
2117 Female, age 91, right hemisphere 144.2
Hippocampus, CA1
nTPM: 198.3
2749 Male, age 80, left hemisphere 315.7
2527 Male, age 74, both hemispheres 197.8
1873 Female, age 85, both hemispheres 177.8
2082 Female, age 91, right hemisphere 152.6
2045 Male, age 76, both hemispheres 147.7
Hippocampus, CA2
nTPM: 189.6
1892 Male, age 76, both hemispheres 234.0
1963 Male, age 80, left hemisphere 233.3
2437 Female, age 94, left hemisphere 195.6
1940 Female, age 85, left hemisphere 169.2
2113 Female, age 91, right hemisphere 154.3
2249 Male, age 74, both hemispheres 151.5
Hippocampus, CA3
nTPM: 194.2
2137 Male, age 80, left hemisphere 280.6
2861 Female, age 67, both hemispheres 233.0
1867 Male, age 76, both hemispheres 197.3
2620 Female, age 94, left hemisphere 168.9
1891 Female, age 85, both hemispheres 153.6
2436 Male, age 74, both hemispheres 131.9
Parahippocampal cortex
nTPM: 200.2
1850 Male, age 80, both hemispheres 222.7
2622 Female, age 67, right hemisphere 219.7
2245 Female, age 91, both hemispheres 210.2
1990 Female, age 91, right hemisphere 205.5
2532 Female, age 72, left hemisphere 199.5
1933 Female, age 85, both hemispheres 197.5
2692 Male, age 74, both hemispheres 192.1
2018 Male, age 76, both hemispheres 188.3
2250 Female, age 67, right hemisphere 184.4
2693 Female, age 94, both hemispheres 182.6
Perirhinal gyrus
nTPM: 224.2
1847 Female, age 91, left hemisphere 269.2
1794 Male, age 80, right hemisphere 233.0
2848 Male, age 76, right hemisphere 210.7
2521 Female, age 94, right hemisphere 205.4
1841 Female, age 85, right hemisphere 202.7
Subiculum
nTPM: 180.7
2438 Female, age 94, left hemisphere 209.2
1901 Male, age 80, both hemispheres 202.5
1977 Female, age 85, both hemispheres 202.1
2619 Male, age 74, both hemispheres 186.1
2042 Male, age 76, both hemispheres 142.6
2729 Female, age 91, right hemisphere 141.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 76.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.2
Samples: 255

Max nTPM: 165.5
Min nTPM: 23.1
Std nTPM: 25.4
Median nTPM: 70.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 165.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 153.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 152.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 146.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 144.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 142.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 140.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 137.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 134.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 134.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 133.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 148.9
FF:10153-102I9 76 years, female 162.8
FF:10169-103B7 60 years, female 135.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 150.5
Pig sample Sample description nTPM
Subiculum
nTPM: 115.3
Samples: 4

Max nTPM: 155.0
Min nTPM: 94.4
Sample A Female 155.0
Sample B Female 104.7
Sample C Male 107.0
Sample D Male 94.4
Dorsal hippocampus
nTPM: 150.6
Samples: 4

Max nTPM: 185.8
Min nTPM: 114.7
Sample A Female 185.8
Sample B Female 176.0
Sample C Male 125.7
Sample D Male 114.7
Entorhinal cortex
nTPM: 147.8
Samples: 4

Max nTPM: 159.2
Min nTPM: 133.2
Sample A Female 150.9
Sample B Female 147.8
Sample C Male 159.2
Sample D Male 133.2
Ventral hippocampus
nTPM: 134.1
Samples: 4

Max nTPM: 194.1
Min nTPM: 94.7
Sample A Female 113.5
Sample B Female 94.7
Sample C Male 134.0
Sample D Male 194.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 308.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 308.9
Samples: 4

Max nTPM: 329.6
Min nTPM: 290.4
Sample A Male 321.5
Sample B Male 329.6
Sample C Female 290.4
Sample D Female 294.1
Hippocampal formation
nTPM: 270.3
Samples: 4

Max nTPM: 279.1
Min nTPM: 261.8
Sample A Male 274.2
Sample B Male 265.9
Sample C Female 279.1
Sample D Female 261.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.1
74882698 Antisense, RP_060315_04_G04, Mouse strain C57BL/6J (56 days, male) 19.8
69817240 Antisense, RP_050510_02_H09, Mouse strain C57BL/6J (56 days, male) 14.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo