A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
47.6
nTPM
Monaco:
54.2
nTPM
Schmiedel:
24.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.6
HPA sample
nTPM
Memory B-cell nTPM: 45.2
Samples: 6
Max nTPM: 69.6
Min nTPM: 24.4
P10809_1017
24.4
P10809_1025
49.8
P10809_1044
69.6
P10809_1063
47.6
P10809_1092
47.1
P10809_1105
32.6
Naive B-cell nTPM: 47.6
Samples: 6
Max nTPM: 156.9
Min nTPM: 14.1
P10809_1011
14.1
P10809_1029
23.9
P10809_1048
156.9
P10809_1067
26.5
P10809_1091
36.6
P10809_1104
27.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 37.3
Samples: 4
Max nTPM: 51.1
Min nTPM: 24.6
RHH5310_R3677
37.4
RHH5218_R3590
24.6
RHH5247_R3619
36.1
RHH5276_R3648
51.1
Naive B-cell nTPM: 27.7
Samples: 4
Max nTPM: 31.3
Min nTPM: 21.2
RHH5308_R3675
27.2
RHH5216_R3588
31.0
RHH5245_R3617
21.2
RHH5274_R3646
31.3
Non-switched memory B-cell nTPM: 30.2
Samples: 4
Max nTPM: 39.7
Min nTPM: 12.5
RHH5309_R3676
33.6
RHH5217_R3589
12.5
RHH5246_R3618
35.0
RHH5275_R3647
39.7
Plasmablast nTPM: 54.2
Samples: 4
Max nTPM: 64.1
Min nTPM: 36.2
RHH5312_R3679
36.2
RHH5220_R3592
64.1
RHH5249_R3621
60.6
RHH5278_R3650
55.7
Switched memory B-cell nTPM: 46.4
Samples: 4
Max nTPM: 56.0
Min nTPM: 39.3
RHH5311_R3678
45.6
RHH5219_R3591
56.0
RHH5248_R3620
44.6
RHH5277_R3649
39.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
Schmiedel sample id
TPM
Naive B-cell TPM: 24.0
Samples: 91
Max TPM: 37.5
Min TPM: 11.5
B_CELL_NAIVE_1
37.5
B_CELL_NAIVE_2
36.9
B_CELL_NAIVE_3
36.7
B_CELL_NAIVE_4
35.5
B_CELL_NAIVE_5
34.2
B_CELL_NAIVE_6
32.8
B_CELL_NAIVE_7
32.7
B_CELL_NAIVE_8
30.3
B_CELL_NAIVE_9
30.2
B_CELL_NAIVE_10
29.6
B_CELL_NAIVE_11
29.6
B_CELL_NAIVE_12
29.2
B_CELL_NAIVE_13
28.5
B_CELL_NAIVE_14
28.1
B_CELL_NAIVE_15
28.1
B_CELL_NAIVE_16
27.7
B_CELL_NAIVE_17
27.2
B_CELL_NAIVE_18
26.7
B_CELL_NAIVE_19
26.4
B_CELL_NAIVE_20
26.4
B_CELL_NAIVE_21
26.4
B_CELL_NAIVE_22
26.4
B_CELL_NAIVE_23
26.4
B_CELL_NAIVE_24
26.0
B_CELL_NAIVE_25
26.0
B_CELL_NAIVE_26
26.0
B_CELL_NAIVE_27
26.0
B_CELL_NAIVE_28
25.9
B_CELL_NAIVE_29
25.6
B_CELL_NAIVE_30
25.6
B_CELL_NAIVE_31
25.4
B_CELL_NAIVE_32
25.3
B_CELL_NAIVE_33
25.3
B_CELL_NAIVE_34
25.3
B_CELL_NAIVE_35
25.2
B_CELL_NAIVE_36
25.2
B_CELL_NAIVE_37
25.1
B_CELL_NAIVE_38
25.0
B_CELL_NAIVE_39
25.0
B_CELL_NAIVE_40
24.8
B_CELL_NAIVE_41
24.8
B_CELL_NAIVE_42
24.7
B_CELL_NAIVE_43
24.6
B_CELL_NAIVE_44
24.6
B_CELL_NAIVE_45
24.5
B_CELL_NAIVE_46
24.4
B_CELL_NAIVE_47
24.2
B_CELL_NAIVE_48
24.1
B_CELL_NAIVE_49
23.9
B_CELL_NAIVE_50
23.3
B_CELL_NAIVE_51
23.3
B_CELL_NAIVE_52
23.1
B_CELL_NAIVE_53
23.0
B_CELL_NAIVE_54
22.6
B_CELL_NAIVE_55
22.6
B_CELL_NAIVE_56
22.4
B_CELL_NAIVE_57
22.3
B_CELL_NAIVE_58
22.2
B_CELL_NAIVE_59
22.1
B_CELL_NAIVE_60
22.1
B_CELL_NAIVE_61
21.9
B_CELL_NAIVE_62
21.9
B_CELL_NAIVE_63
21.8
B_CELL_NAIVE_64
21.5
B_CELL_NAIVE_65
21.5
B_CELL_NAIVE_66
21.3
B_CELL_NAIVE_67
21.2
B_CELL_NAIVE_68
21.0
B_CELL_NAIVE_69
20.9
B_CELL_NAIVE_70
20.9
B_CELL_NAIVE_71
20.5
B_CELL_NAIVE_72
20.4
B_CELL_NAIVE_73
20.4
B_CELL_NAIVE_74
20.3
B_CELL_NAIVE_75
20.2
B_CELL_NAIVE_76
20.1
B_CELL_NAIVE_77
20.0
B_CELL_NAIVE_78
19.5
B_CELL_NAIVE_79
19.2
B_CELL_NAIVE_80
18.5
B_CELL_NAIVE_81
18.2
B_CELL_NAIVE_82
18.1
B_CELL_NAIVE_83
17.8
B_CELL_NAIVE_84
17.5
B_CELL_NAIVE_85
17.2
B_CELL_NAIVE_86
17.2
B_CELL_NAIVE_87
16.8
B_CELL_NAIVE_88
16.6
B_CELL_NAIVE_89
14.3
B_CELL_NAIVE_90
12.7
B_CELL_NAIVE_91
11.5
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The Human Protein Atlas project is funded
