A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.9
nTPM
Monaco:
27.2
nTPM
Schmiedel:
16.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
HPA sample
nTPM
Classical monocyte nTPM: 9.1
Samples: 6
Max nTPM: 16.0
Min nTPM: 5.3
P10809_1003
5.3
P10809_1020
10.2
P10809_1039
16.0
P10809_1058
7.3
P10809_1080
7.9
P10809_1107
8.2
Intermediate monocyte nTPM: 15.3
Samples: 6
Max nTPM: 21.2
Min nTPM: 11.6
P10809_1004
13.5
P10809_1023
17.2
P10809_1042
21.2
P10809_1061
11.6
P10809_1081
12.4
P10809_1108
16.0
Non-classical monocyte nTPM: 16.9
Samples: 5
Max nTPM: 22.4
Min nTPM: 13.3
P10809_1005
14.3
P10809_1053
18.2
P10809_1072
13.3
P10809_1082
16.1
P10809_1109
22.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Monaco sample
nTPM
Classical monocyte nTPM: 13.7
Samples: 4
Max nTPM: 18.4
Min nTPM: 5.8
RHH5313_R3680
16.4
RHH5221_R3593
18.4
RHH5250_R3622
5.8
RHH5279_R3651
14.3
Intermediate monocyte nTPM: 23.3
Samples: 4
Max nTPM: 26.1
Min nTPM: 20.6
RHH5314_R3681
20.6
RHH5222_R3594
24.8
RHH5251_R3623
26.1
RHH5280_R3652
21.7
Non-classical monocyte nTPM: 27.2
Samples: 4
Max nTPM: 36.3
Min nTPM: 11.8
RHH5315_R3682
36.3
RHH5223_R3595
11.8
RHH5252_R3624
31.9
RHH5281_R3653
28.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.5
Schmiedel sample id
TPM
Classical monocyte TPM: 7.2
Samples: 91
Max TPM: 9.8
Min TPM: 4.0
MONOCYTES_1
9.8
MONOCYTES_2
9.7
MONOCYTES_3
9.7
MONOCYTES_4
9.3
MONOCYTES_5
9.1
MONOCYTES_6
9.0
MONOCYTES_7
8.8
MONOCYTES_8
8.8
MONOCYTES_9
8.8
MONOCYTES_10
8.8
MONOCYTES_11
8.8
MONOCYTES_12
8.7
MONOCYTES_13
8.7
MONOCYTES_14
8.6
MONOCYTES_15
8.4
MONOCYTES_16
8.3
MONOCYTES_17
8.2
MONOCYTES_18
8.1
MONOCYTES_19
8.1
MONOCYTES_20
8.1
MONOCYTES_21
8.1
MONOCYTES_22
8.0
MONOCYTES_23
8.0
MONOCYTES_24
7.9
MONOCYTES_25
7.9
MONOCYTES_26
7.9
MONOCYTES_27
7.9
MONOCYTES_28
7.9
MONOCYTES_29
7.9
MONOCYTES_30
7.7
MONOCYTES_31
7.7
MONOCYTES_32
7.6
MONOCYTES_33
7.6
MONOCYTES_34
7.6
MONOCYTES_35
7.5
MONOCYTES_36
7.5
MONOCYTES_37
7.5
MONOCYTES_38
7.4
MONOCYTES_39
7.4
MONOCYTES_40
7.4
MONOCYTES_41
7.3
MONOCYTES_42
7.3
MONOCYTES_43
7.3
MONOCYTES_44
7.3
MONOCYTES_45
7.3
MONOCYTES_46
7.2
MONOCYTES_47
7.2
MONOCYTES_48
7.2
MONOCYTES_49
7.1
MONOCYTES_50
7.1
MONOCYTES_51
7.1
MONOCYTES_52
7.1
MONOCYTES_53
7.1
MONOCYTES_54
7.1
MONOCYTES_55
6.9
MONOCYTES_56
6.8
MONOCYTES_57
6.8
MONOCYTES_58
6.8
MONOCYTES_59
6.7
MONOCYTES_60
6.7
MONOCYTES_61
6.7
MONOCYTES_62
6.6
MONOCYTES_63
6.6
MONOCYTES_64
6.6
MONOCYTES_65
6.6
MONOCYTES_66
6.6
MONOCYTES_67
6.6
MONOCYTES_68
6.5
MONOCYTES_69
6.5
MONOCYTES_70
6.4
MONOCYTES_71
6.3
MONOCYTES_72
6.3
MONOCYTES_73
6.3
MONOCYTES_74
6.3
MONOCYTES_75
6.0
MONOCYTES_76
6.0
MONOCYTES_77
5.9
MONOCYTES_78
5.9
MONOCYTES_79
5.8
MONOCYTES_80
5.7
MONOCYTES_81
5.6
MONOCYTES_82
5.5
MONOCYTES_83
5.4
MONOCYTES_84
5.4
MONOCYTES_85
5.3
MONOCYTES_86
5.3
MONOCYTES_87
5.3
MONOCYTES_88
5.0
MONOCYTES_89
4.7
MONOCYTES_90
4.2
MONOCYTES_91
4.0
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Non-classical monocyte TPM: 16.4
Samples: 90
Max TPM: 24.5
Min TPM: 10.7
M2_1
24.5
M2_2
22.2
M2_3
21.8
M2_4
21.4
M2_5
21.3
M2_6
21.0
M2_7
20.8
M2_8
20.6
M2_9
20.5
M2_10
20.5
M2_11
20.3
M2_12
20.1
M2_13
20.1
M2_14
20.1
M2_15
19.6
M2_16
19.5
M2_17
19.1
M2_18
18.9
M2_19
18.9
M2_20
18.7
M2_21
18.7
M2_22
18.6
M2_23
18.5
M2_24
18.3
M2_25
18.2
M2_26
18.1
M2_27
18.0
M2_28
17.9
M2_29
17.9
M2_30
17.8
M2_31
17.6
M2_32
17.5
M2_33
17.4
M2_34
17.1
M2_35
17.1
M2_36
17.1
M2_37
17.0
M2_38
17.0
M2_39
16.9
M2_40
16.9
M2_41
16.8
M2_42
16.8
M2_43
16.5
M2_44
16.3
M2_45
16.3
M2_46
16.2
M2_47
16.1
M2_48
16.1
M2_49
15.9
M2_50
15.8
M2_51
15.7
M2_52
15.6
M2_53
15.4
M2_54
15.4
M2_55
15.4
M2_56
15.4
M2_57
15.3
M2_58
15.3
M2_59
15.2
M2_60
15.2
M2_61
15.1
M2_62
15.1
M2_63
14.9
M2_64
14.8
M2_65
14.8
M2_66
14.7
M2_67
14.7
M2_68
14.4
M2_69
14.4
M2_70
14.2
M2_71
14.1
M2_72
14.0
M2_73
13.8
M2_74
13.6
M2_75
13.6
M2_76
13.5
M2_77
13.5
M2_78
13.5
M2_79
13.4
M2_80
13.2
M2_81
13.0
M2_82
12.6
M2_83
12.0
M2_84
11.9
M2_85
11.7
M2_86
11.6
M2_87
11.3
M2_88
11.2
M2_89
10.9
M2_90
10.7
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