MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:39.6 nTPM
GTEx:8.9 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:12.3 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.8
2666 Male, age 74, left hemisphere 40.0
1830 Male, age 51, unknown 38.9
2586 Male, age 75, left hemisphere 38.2
1870 Female, age 42, unknown 35.5
1827 Male, age 72, unknown 35.3
2019 Male, age 18, unknown 33.7
2411 Female, age 72, unknown 32.9
1833 Male, age 53, unknown 32.4
2828 Female, age 72, unknown 30.6
2219 Male, age 76, both hemispheres 30.0
Dorsal raphe nucleus
nTPM: 31.0
2750 Male, age 76, both hemispheres 40.7
2047 Male, age 72, unknown 31.5
2016 Female, age 72, unknown 31.0
1828 Male, age 53, unknown 27.9
2298 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 32.6
2849 Male, age 72, unknown 33.8
1890 Male, age 53, unknown 32.5
2097 Female, age 72, unknown 32.5
1848 Female, age 42, unknown 31.6
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Periaquaductal grey, anterior
nTPM: 33.7
1947 Male, age 18, unknown 41.2
2502 Female, age 75, unknown 30.7
1795 Male, age 51, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 28.7
1831 Male, age 72, unknown 25.6
1840 Male, age 53, unknown 24.6
2850 Male, age 76, both hemispheres 17.4
Periaquaductal grey, lateral
nTPM: 26.6
2272 Male, age 74, both hemispheres 29.2
2053 Male, age 18, unknown 28.7
2140 Male, age 76, both hemispheres 21.9
Pretectal area
nTPM: 29.4
2407 Male, age 75, both hemispheres 44.3
2316 Male, age 76, right hemisphere 37.2
2825 Male, age 18, unknown 32.6
2273 Male, age 74, both hemispheres 30.4
1815 Male, age 53, unknown 28.7
2007 Male, age 72, unknown 28.2
1817 Female, age 42, unknown 27.0
2224 Female, age 72, unknown 26.1
1816 Male, age 51, unknown 23.7
1944 Female, age 72, unknown 23.4
2667 Female, age 75, unknown 21.6
Red nucleus
nTPM: 39.6
2823 Male, age 76, right hemisphere 46.2
2584 Male, age 75, left hemisphere 44.7
1865 Male, age 51, unknown 43.4
2588 Male, age 74, left hemisphere 41.9
2725 Female, age 75, unknown 40.4
1821 Female, age 72, unknown 39.0
1904 Male, age 53, unknown 37.9
2769 Male, age 72, unknown 37.9
1954 Female, age 42, unknown 36.8
2227 Male, age 72, unknown 36.8
2503 Female, age 72, unknown 35.4
2785 Male, age 18, unknown 35.1
Substantia nigra
nTPM: 33.4
2583 Male, age 75, right hemisphere 49.4
2590 Female, age 75, unknown 40.5
1941 Male, age 53, unknown 37.1
2241 Male, age 72, unknown 33.4
2665 Male, age 74, both hemispheres 33.4
1851 Male, age 51, unknown 32.6
2409 Female, age 72, unknown 30.1
1889 Female, age 72, unknown 27.0
2699 Male, age 18, unknown 25.9
1916 Female, age 42, unknown 25.0
Superior colliculus
nTPM: 34.1
2587 Male, age 74, left hemisphere 40.1
2668 Female, age 75, unknown 38.3
2664 Male, age 75, both hemispheres 37.8
1839 Male, age 51, unknown 37.6
1895 Male, age 76, right hemisphere 35.8
1796 Male, age 53, unknown 34.2
2261 Male, age 18, unknown 32.2
1995 Male, age 72, unknown 32.0
1913 Female, age 42, unknown 31.3
2087 Female, age 72, unknown 21.8
Ventral tegmental area
nTPM: 31.5
2223 Female, age 72, unknown 40.3
2021 Male, age 53, unknown 31.9
1942 Male, age 51, unknown 31.5
2410 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 29.7
2218 Male, age 76, both hemispheres 25.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 183

Max nTPM: 35.9
Min nTPM: 2.4
Std nTPM: 3.8
Median nTPM: 8.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 35.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 18.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 17.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 17.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 16.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 15.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.4
FF:10158-103A5 76 years, female 47.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.4
Samples: 4

Max nTPM: 48.3
Min nTPM: 24.8
Sample A Female 42.9
Sample B Female 24.8
Sample C Male 37.5
Sample D Male 48.3
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 37.4
Min nTPM: 31.5
Sample A Female 37.4
Sample B Female 36.8
Sample C Male 31.5
Sample D Male 36.9
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 31.3
Min nTPM: 26.0
Sample B Female 31.3
Sample C Male 26.0
Sample D Male 28.7
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 43.2
Min nTPM: 15.7
Sample A Female 43.2
Sample B Female 15.7
Sample C Male 37.7
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 11.5
Sample A Male 11.8
Sample B Male 13.0
Sample C Female 12.7
Sample D Female 11.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73497621 Antisense, RP_051121_01_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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