On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
62.3
nTPM
HPA Brain:
143.7
nTPM
GTEx:
62.3
nTPM
FANTOM5:
114.5
Scaled Tags Per Million
Macaque:
127.4
nTPM
Mouse:
95.4
nTPM
Rat:
97.1
nTPM
Pig:
109.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
143.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 105.8
1870
Female, age 42, unknown
129.3
2411
Female, age 72, unknown
118.7
1827
Male, age 72, unknown
118.6
1833
Male, age 53, unknown
108.8
2828
Female, age 72, unknown
105.0
2586
Male, age 75, left hemisphere
103.0
1830
Male, age 51, unknown
99.4
2019
Male, age 18, unknown
99.1
2219
Male, age 76, both hemispheres
98.8
2666
Male, age 74, left hemisphere
77.2
Dorsal raphe nucleus nTPM: 131.2
2298
Female, age 72, unknown
149.3
2047
Male, age 72, unknown
139.6
2750
Male, age 76, both hemispheres
129.4
2016
Female, age 72, unknown
120.4
1828
Male, age 53, unknown
117.5
Inferior colliculus nTPM: 123.6
2097
Female, age 72, unknown
139.5
2849
Male, age 72, unknown
122.4
1848
Female, age 42, unknown
121.9
1890
Male, age 53, unknown
110.7
Median raphe nucleus nTPM: 143.7
2220
Male, age 76, midline
143.7
Periaquaductal grey, anterior nTPM: 118.1
1947
Male, age 18, unknown
125.1
2502
Female, age 75, unknown
114.9
1795
Male, age 51, unknown
114.3
Periaquaductal grey, dorsal nTPM: 126.4
1840
Male, age 53, unknown
145.8
2850
Male, age 76, both hemispheres
138.8
2464
Female, age 72, unknown
118.0
1831
Male, age 72, unknown
103.2
Periaquaductal grey, lateral nTPM: 115.5
2140
Male, age 76, both hemispheres
126.5
2272
Male, age 74, both hemispheres
110.6
2053
Male, age 18, unknown
109.5
Pretectal area nTPM: 118.6
2667
Female, age 75, unknown
147.2
2224
Female, age 72, unknown
131.6
2273
Male, age 74, both hemispheres
125.1
1817
Female, age 42, unknown
122.1
2825
Male, age 18, unknown
119.4
2007
Male, age 72, unknown
118.5
1816
Male, age 51, unknown
117.9
1944
Female, age 72, unknown
117.3
1815
Male, age 53, unknown
112.7
2316
Male, age 76, right hemisphere
98.4
2407
Male, age 75, both hemispheres
94.1
Red nucleus nTPM: 98.8
1821
Female, age 72, unknown
124.4
1954
Female, age 42, unknown
109.9
2725
Female, age 75, unknown
106.8
2823
Male, age 76, right hemisphere
99.4
1904
Male, age 53, unknown
99.3
2769
Male, age 72, unknown
98.6
2227
Male, age 72, unknown
97.4
1865
Male, age 51, unknown
96.2
2785
Male, age 18, unknown
95.6
2503
Female, age 72, unknown
95.4
2584
Male, age 75, left hemisphere
83.0
2588
Male, age 74, left hemisphere
79.6
Substantia nigra nTPM: 103.9
2241
Male, age 72, unknown
129.6
1916
Female, age 42, unknown
125.5
1889
Female, age 72, unknown
121.1
1851
Male, age 51, unknown
109.2
1941
Male, age 53, unknown
107.3
2409
Female, age 72, unknown
106.9
2699
Male, age 18, unknown
98.5
2583
Male, age 75, right hemisphere
83.9
2590
Female, age 75, unknown
78.9
2665
Male, age 74, both hemispheres
77.8
Superior colliculus nTPM: 101.6
1895
Male, age 76, right hemisphere
112.9
2261
Male, age 18, unknown
111.7
1839
Male, age 51, unknown
107.7
2087
Female, age 72, unknown
107.6
1796
Male, age 53, unknown
106.1
2587
Male, age 74, left hemisphere
103.2
2664
Male, age 75, both hemispheres
102.6
2668
Female, age 75, unknown
98.9
1913
Female, age 42, unknown
84.9
1995
Male, age 72, unknown
80.5
Ventral tegmental area nTPM: 112.1
2218
Male, age 76, both hemispheres
120.4
1915
Female, age 42, unknown
114.1
2410
Female, age 72, unknown
112.7
1942
Male, age 51, unknown
109.3
2223
Female, age 72, unknown
108.4
2021
Male, age 53, unknown
107.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 62.3
Samples: 183
Max nTPM: 124.1
Min nTPM: 25.5
Std nTPM: 18.7
Median nTPM: 60.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
124.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
116.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
111.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
98.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
98.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
98.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
96.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
95.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
94.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
93.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
93.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
92.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
91.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
91.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
90.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
90.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
89.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
89.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
88.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
88.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
87.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
86.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
86.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
86.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
85.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
85.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
84.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
84.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
83.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
82.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
81.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
80.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
80.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
80.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
80.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
79.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
79.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
78.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
78.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
78.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
78.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
77.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
77.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
77.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
75.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
74.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
73.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
73.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
73.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
72.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
72.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
72.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
71.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
70.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
70.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
70.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
69.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
68.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
68.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
68.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
68.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
67.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
67.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
67.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
67.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
66.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
66.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
66.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
65.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
65.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
65.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
65.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
65.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
64.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
64.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
64.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
63.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
63.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
63.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
62.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
62.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
62.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
62.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
62.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
62.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
61.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
61.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
61.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
60.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
60.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
60.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
60.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
60.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
60.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
59.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
59.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
59.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
58.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
58.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
58.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
58.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
58.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
58.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
58.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
58.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
57.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
57.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
56.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
56.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
56.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
55.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
55.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
55.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
54.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
54.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
54.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
53.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
53.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
52.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
52.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
52.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
52.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
52.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
52.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
51.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
51.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
51.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
51.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
51.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
51.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
51.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
51.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
51.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
50.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
50.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
50.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
50.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
50.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
50.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
49.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
49.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
48.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
48.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
47.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
47.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
47.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
47.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
46.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
44.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
44.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
44.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
43.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
43.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
43.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
43.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
42.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
42.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
42.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
42.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
42.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
41.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
41.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
41.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
40.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
39.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
39.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
38.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
38.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
37.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
37.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
37.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
35.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
33.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
32.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
32.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
32.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
29.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
28.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
28.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
27.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
27.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
25.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
25.5
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 127.4
Samples: 1
Max nTPM: 127.4
Min nTPM: 127.4
Sample A
127.4
Midbrain nTPM: 110.9
Samples: 1
Max nTPM: 110.9
Min nTPM: 110.9
Sample A
110.9
Superior colliculi nTPM: 100.3
Samples: 1
Max nTPM: 100.3
Min nTPM: 100.3
Sample A
100.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 109.8
Samples: 3
Max nTPM: 119.8
Min nTPM: 91.2
Sample A
Female
118.3
Sample B
Female
91.2
Sample C
Male
119.8
Midbrain nTPM: 108.4
Samples: 3
Max nTPM: 111.4
Min nTPM: 106.4
Sample B
Female
106.4
Sample C
Male
107.5
Sample D
Male
111.4
Periaqueductal gray nTPM: 104.2
Samples: 3
Max nTPM: 116.8
Min nTPM: 95.2
Sample B
Female
100.7
Sample C
Male
116.8
Sample D
Male
95.2
Superior colliculi nTPM: 97.2
Samples: 4
Max nTPM: 109.7
Min nTPM: 81.2
Sample A
Female
109.7
Sample B
Female
81.2
Sample C
Male
102.7
Sample D
Male
95.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 95.4
Samples: 4
Max nTPM: 99.2
Min nTPM: 92.9
Sample A
93.5
Sample B
92.9
Sample C
95.9
Sample D
99.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 97.1
Samples: 4
Max nTPM: 102.7
Min nTPM: 93.6
Sample A
93.6
Sample A
102.7
Sample A
97.8
Sample A
94.4
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
