On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.8
nTPM
HPA Brain:
122.2
nTPM
GTEx:
23.8
nTPM
FANTOM5:
5.6
Scaled Tags Per Million
Macaque:
22.1
nTPM
Mouse:
75.0
nTPM
Rat:
266.1
nTPM
Pig:
40.0
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 89.1
2219
Male, age 76, both hemispheres
158.9
2586
Male, age 75, left hemisphere
109.2
2019
Male, age 18, unknown
103.9
2666
Male, age 74, left hemisphere
99.7
2828
Female, age 72, unknown
88.8
1827
Male, age 72, unknown
86.0
1870
Female, age 42, unknown
65.4
2411
Female, age 72, unknown
64.8
1830
Male, age 51, unknown
61.4
1833
Male, age 53, unknown
53.4
Dorsal raphe nucleus nTPM: 74.0
2298
Female, age 72, unknown
94.1
2047
Male, age 72, unknown
90.2
2750
Male, age 76, both hemispheres
66.4
1828
Male, age 53, unknown
64.0
2016
Female, age 72, unknown
55.3
Inferior colliculus nTPM: 85.0
2097
Female, age 72, unknown
98.5
1890
Male, age 53, unknown
96.4
1848
Female, age 42, unknown
76.1
2849
Male, age 72, unknown
69.0
Median raphe nucleus nTPM: 98.7
2220
Male, age 76, midline
98.7
Periaquaductal grey, anterior nTPM: 122.2
2502
Female, age 75, unknown
155.9
1795
Male, age 51, unknown
117.8
1947
Male, age 18, unknown
92.8
Periaquaductal grey, dorsal nTPM: 85.7
1840
Male, age 53, unknown
97.4
1831
Male, age 72, unknown
90.8
2464
Female, age 72, unknown
87.6
2850
Male, age 76, both hemispheres
67.0
Periaquaductal grey, lateral nTPM: 71.5
2140
Male, age 76, both hemispheres
79.3
2053
Male, age 18, unknown
69.0
2272
Male, age 74, both hemispheres
66.1
Pretectal area nTPM: 103.4
1816
Male, age 51, unknown
167.0
1944
Female, age 72, unknown
147.5
2007
Male, age 72, unknown
142.6
1817
Female, age 42, unknown
121.0
2667
Female, age 75, unknown
110.2
1815
Male, age 53, unknown
102.4
2224
Female, age 72, unknown
88.6
2316
Male, age 76, right hemisphere
74.9
2825
Male, age 18, unknown
70.3
2407
Male, age 75, both hemispheres
66.1
2273
Male, age 74, both hemispheres
46.9
Red nucleus nTPM: 58.2
2785
Male, age 18, unknown
100.5
2584
Male, age 75, left hemisphere
85.9
2588
Male, age 74, left hemisphere
58.9
2227
Male, age 72, unknown
57.8
2503
Female, age 72, unknown
56.3
1954
Female, age 42, unknown
54.3
2725
Female, age 75, unknown
53.2
1904
Male, age 53, unknown
52.0
2769
Male, age 72, unknown
48.4
2823
Male, age 76, right hemisphere
48.1
1865
Male, age 51, unknown
45.1
1821
Female, age 72, unknown
38.2
Substantia nigra nTPM: 77.9
2665
Male, age 74, both hemispheres
118.7
1889
Female, age 72, unknown
113.8
1941
Male, age 53, unknown
93.5
1916
Female, age 42, unknown
89.5
1851
Male, age 51, unknown
78.6
2241
Male, age 72, unknown
72.5
2590
Female, age 75, unknown
66.2
2699
Male, age 18, unknown
53.1
2409
Female, age 72, unknown
49.0
2583
Male, age 75, right hemisphere
44.5
Superior colliculus nTPM: 91.9
2087
Female, age 72, unknown
143.7
2664
Male, age 75, both hemispheres
107.3
1796
Male, age 53, unknown
106.1
2261
Male, age 18, unknown
103.8
1895
Male, age 76, right hemisphere
101.9
2587
Male, age 74, left hemisphere
81.0
1839
Male, age 51, unknown
70.9
1913
Female, age 42, unknown
70.8
2668
Female, age 75, unknown
70.8
1995
Male, age 72, unknown
62.9
Ventral tegmental area nTPM: 85.5
2218
Male, age 76, both hemispheres
104.2
1942
Male, age 51, unknown
100.9
1915
Female, age 42, unknown
81.5
2021
Male, age 53, unknown
78.4
2223
Female, age 72, unknown
74.2
2410
Female, age 72, unknown
73.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.8
Samples: 183
Max nTPM: 131.5
Min nTPM: 1.2
Std nTPM: 17.1
Median nTPM: 21.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
131.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
101.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
95.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
76.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
61.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
50.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
50.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
49.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
48.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
46.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
46.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
46.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
46.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
45.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
42.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
42.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
41.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
41.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
40.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
40.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
40.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
39.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
39.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
37.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
37.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
37.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
35.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
35.6
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
35.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
35.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
35.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
35.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
34.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
34.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
33.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
33.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
33.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
33.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
33.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
33.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
33.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
32.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
32.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
32.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
32.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
31.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
31.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
30.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
29.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
29.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
29.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
29.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
28.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
28.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
27.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
27.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
27.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
27.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
26.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
26.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
26.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
26.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
26.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
25.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
25.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
24.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
24.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
24.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
24.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
24.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
22.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
22.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
22.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
22.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
22.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
22.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
22.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
22.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
21.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
21.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
21.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
21.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
20.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
20.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
19.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
19.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
19.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
18.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
18.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
18.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
17.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
17.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
17.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
17.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
16.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
16.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
16.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
16.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
16.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
15.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
15.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
14.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
14.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
14.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
13.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
13.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
13.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
13.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
13.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
13.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
13.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
12.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
11.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
11.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
11.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
11.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
11.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
11.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
10.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
10.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
10.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
10.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
9.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
9.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
8.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
8.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
8.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
7.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
7.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
6.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
6.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
6.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
6.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
6.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
5.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
5.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
5.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
3.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
3.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 9.8
Samples: 1
Max nTPM: 9.8
Min nTPM: 9.8
Sample A
9.8
Midbrain nTPM: 14.3
Samples: 1
Max nTPM: 14.3
Min nTPM: 14.3
Sample A
14.3
Superior colliculi nTPM: 22.1
Samples: 1
Max nTPM: 22.1
Min nTPM: 22.1
Sample A
22.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.0
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 23.5
Samples: 3
Max nTPM: 31.1
Min nTPM: 14.0
Sample A
Female
25.4
Sample B
Female
14.0
Sample C
Male
31.1
Midbrain nTPM: 40.0
Samples: 3
Max nTPM: 67.5
Min nTPM: 15.3
Sample B
Female
15.3
Sample C
Male
67.5
Sample D
Male
37.2
Periaqueductal gray nTPM: 15.3
Samples: 3
Max nTPM: 20.1
Min nTPM: 12.5
Sample B
Female
13.4
Sample C
Male
20.1
Sample D
Male
12.5
Superior colliculi nTPM: 26.2
Samples: 4
Max nTPM: 39.3
Min nTPM: 12.0
Sample A
Female
23.1
Sample B
Female
12.0
Sample C
Male
39.3
Sample D
Male
30.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
75.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 75.0
Samples: 4
Max nTPM: 82.3
Min nTPM: 64.0
Sample A
64.0
Sample B
82.3
Sample C
81.0
Sample D
72.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
266.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 266.1
Samples: 4
Max nTPM: 273.5
Min nTPM: 248.0
Sample A
273.5
Sample A
270.5
Sample A
272.3
Sample A
248.0
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The Human Protein Atlas project is funded
