A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
225.1
nTPM
Monaco:
77.8
nTPM
Schmiedel:
51.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.1
HPA sample
nTPM
NK-cell nTPM: 225.1
Samples: 6
Max nTPM: 286.1
Min nTPM: 122.7
P10809_1013
122.7
P10809_1033
286.1
P10809_1052
224.6
P10809_1071
214.3
P10809_1093
276.8
P10809_1103
225.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.8
Monaco sample
nTPM
NK-cell nTPM: 77.8
Samples: 4
Max nTPM: 94.0
Min nTPM: 54.6
RHH5316_R3683
92.5
RHH5224_R3596
70.2
RHH5253_R3625
54.6
RHH5282_R3654
94.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.9
Schmiedel sample id
TPM
NK-cell TPM: 52.0
Samples: 90
Max TPM: 73.1
Min TPM: 35.7
NK_1
73.1
NK_2
72.4
NK_3
72.2
NK_4
69.3
NK_5
68.3
NK_6
68.0
NK_7
67.7
NK_8
65.5
NK_9
64.3
NK_10
64.0
NK_11
64.0
NK_12
63.5
NK_13
62.7
NK_14
61.8
NK_15
60.1
NK_16
59.6
NK_17
59.6
NK_18
58.3
NK_19
58.3
NK_20
58.0
NK_21
57.7
NK_22
57.7
NK_23
57.2
NK_24
56.5
NK_25
56.2
NK_26
56.0
NK_27
56.0
NK_28
55.5
NK_29
55.4
NK_30
55.1
NK_31
54.9
NK_32
54.2
NK_33
54.1
NK_34
53.6
NK_35
53.5
NK_36
53.5
NK_37
53.2
NK_38
52.9
NK_39
52.9
NK_40
51.7
NK_41
51.4
NK_42
51.2
NK_43
51.2
NK_44
51.0
NK_45
50.9
NK_46
49.9
NK_47
49.7
NK_48
49.7
NK_49
49.0
NK_50
48.9
NK_51
48.9
NK_52
48.8
NK_53
48.6
NK_54
48.6
NK_55
48.5
NK_56
48.3
NK_57
48.2
NK_58
47.7
NK_59
47.6
NK_60
47.4
NK_61
47.1
NK_62
46.6
NK_63
46.4
NK_64
46.2
NK_65
46.0
NK_66
45.8
NK_67
45.4
NK_68
45.3
NK_69
45.3
NK_70
45.2
NK_71
45.2
NK_72
44.9
NK_73
44.8
NK_74
44.8
NK_75
44.4
NK_76
44.4
NK_77
43.4
NK_78
42.9
NK_79
42.8
NK_80
42.8
NK_81
42.6
NK_82
42.5
NK_83
42.5
NK_84
42.3
NK_85
41.8
NK_86
40.6
NK_87
39.6
NK_88
38.2
NK_89
36.1
NK_90
35.7
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