A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
263.7
nTPM
Monaco:
109.4
nTPM
Schmiedel:
67.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
263.7
HPA sample
nTPM
Classical monocyte nTPM: 151.9
Samples: 6
Max nTPM: 229.5
Min nTPM: 110.2
P10809_1003
110.2
P10809_1020
170.6
P10809_1039
229.5
P10809_1058
121.4
P10809_1080
146.1
P10809_1107
133.5
Intermediate monocyte nTPM: 217.8
Samples: 6
Max nTPM: 298.6
Min nTPM: 174.3
P10809_1004
174.3
P10809_1023
298.6
P10809_1042
256.8
P10809_1061
187.0
P10809_1081
184.4
P10809_1108
205.9
Non-classical monocyte nTPM: 263.7
Samples: 5
Max nTPM: 346.2
Min nTPM: 199.6
P10809_1005
199.6
P10809_1053
346.2
P10809_1072
248.1
P10809_1082
246.3
P10809_1109
278.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.4
Monaco sample
nTPM
Classical monocyte nTPM: 74.9
Samples: 4
Max nTPM: 85.7
Min nTPM: 58.8
RHH5313_R3680
83.9
RHH5221_R3593
58.8
RHH5250_R3622
85.7
RHH5279_R3651
71.3
Intermediate monocyte nTPM: 109.4
Samples: 4
Max nTPM: 119.7
Min nTPM: 97.7
RHH5314_R3681
114.0
RHH5222_R3594
97.7
RHH5251_R3623
106.1
RHH5280_R3652
119.7
Non-classical monocyte nTPM: 95.5
Samples: 4
Max nTPM: 105.6
Min nTPM: 75.8
RHH5315_R3682
99.8
RHH5223_R3595
75.8
RHH5252_R3624
105.6
RHH5281_R3653
100.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.3
Schmiedel sample id
TPM
Classical monocyte TPM: 30.1
Samples: 91
Max TPM: 46.4
Min TPM: 22.2
MONOCYTES_1
46.4
MONOCYTES_2
38.6
MONOCYTES_3
38.5
MONOCYTES_4
38.5
MONOCYTES_5
37.2
MONOCYTES_6
36.7
MONOCYTES_7
36.5
MONOCYTES_8
36.3
MONOCYTES_9
36.2
MONOCYTES_10
36.1
MONOCYTES_11
35.4
MONOCYTES_12
35.4
MONOCYTES_13
35.2
MONOCYTES_14
35.0
MONOCYTES_15
34.9
MONOCYTES_16
34.8
MONOCYTES_17
34.5
MONOCYTES_18
34.2
MONOCYTES_19
33.4
MONOCYTES_20
33.3
MONOCYTES_21
33.3
MONOCYTES_22
33.2
MONOCYTES_23
33.2
MONOCYTES_24
32.9
MONOCYTES_25
32.7
MONOCYTES_26
32.7
MONOCYTES_27
32.1
MONOCYTES_28
32.0
MONOCYTES_29
31.8
MONOCYTES_30
31.5
MONOCYTES_31
31.2
MONOCYTES_32
31.1
MONOCYTES_33
31.1
MONOCYTES_34
30.9
MONOCYTES_35
30.9
MONOCYTES_36
30.9
MONOCYTES_37
30.7
MONOCYTES_38
30.6
MONOCYTES_39
30.4
MONOCYTES_40
30.4
MONOCYTES_41
30.3
MONOCYTES_42
30.3
MONOCYTES_43
30.0
MONOCYTES_44
30.0
MONOCYTES_45
30.0
MONOCYTES_46
29.6
MONOCYTES_47
29.6
MONOCYTES_48
29.4
MONOCYTES_49
29.1
MONOCYTES_50
29.0
MONOCYTES_51
29.0
MONOCYTES_52
29.0
MONOCYTES_53
28.7
MONOCYTES_54
28.6
MONOCYTES_55
28.5
MONOCYTES_56
28.4
MONOCYTES_57
28.3
MONOCYTES_58
28.3
MONOCYTES_59
28.0
MONOCYTES_60
27.8
MONOCYTES_61
27.6
MONOCYTES_62
27.6
MONOCYTES_63
27.5
MONOCYTES_64
27.4
MONOCYTES_65
27.1
MONOCYTES_66
27.1
MONOCYTES_67
27.0
MONOCYTES_68
27.0
MONOCYTES_69
26.9
MONOCYTES_70
26.7
MONOCYTES_71
26.6
MONOCYTES_72
26.5
MONOCYTES_73
26.5
MONOCYTES_74
26.4
MONOCYTES_75
25.7
MONOCYTES_76
25.6
MONOCYTES_77
25.5
MONOCYTES_78
25.5
MONOCYTES_79
25.4
MONOCYTES_80
25.4
MONOCYTES_81
25.2
MONOCYTES_82
25.0
MONOCYTES_83
25.0
MONOCYTES_84
24.9
MONOCYTES_85
24.8
MONOCYTES_86
24.3
MONOCYTES_87
24.3
MONOCYTES_88
24.2
MONOCYTES_89
23.5
MONOCYTES_90
23.2
MONOCYTES_91
22.2
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Non-classical monocyte TPM: 67.3
Samples: 90
Max TPM: 106.3
Min TPM: 48.4
M2_1
106.3
M2_2
91.8
M2_3
85.0
M2_4
84.8
M2_5
83.6
M2_6
82.6
M2_7
82.3
M2_8
81.9
M2_9
81.9
M2_10
81.5
M2_11
79.9
M2_12
78.5
M2_13
78.4
M2_14
77.8
M2_15
77.1
M2_16
77.0
M2_17
76.7
M2_18
76.5
M2_19
76.0
M2_20
75.9
M2_21
75.4
M2_22
75.1
M2_23
74.9
M2_24
74.5
M2_25
73.2
M2_26
73.0
M2_27
71.7
M2_28
71.6
M2_29
71.4
M2_30
71.2
M2_31
70.8
M2_32
70.8
M2_33
70.7
M2_34
70.5
M2_35
69.4
M2_36
68.2
M2_37
68.1
M2_38
67.6
M2_39
67.1
M2_40
66.7
M2_41
66.5
M2_42
66.3
M2_43
65.6
M2_44
65.5
M2_45
65.4
M2_46
65.3
M2_47
65.3
M2_48
64.7
M2_49
64.6
M2_50
64.3
M2_51
63.9
M2_52
63.9
M2_53
63.9
M2_54
63.3
M2_55
63.3
M2_56
63.1
M2_57
62.4
M2_58
62.2
M2_59
62.2
M2_60
61.6
M2_61
61.3
M2_62
61.3
M2_63
61.1
M2_64
61.1
M2_65
61.0
M2_66
60.9
M2_67
60.3
M2_68
59.8
M2_69
59.7
M2_70
59.5
M2_71
59.3
M2_72
59.1
M2_73
58.8
M2_74
58.2
M2_75
57.8
M2_76
57.7
M2_77
57.6
M2_78
57.3
M2_79
57.3
M2_80
56.9
M2_81
56.5
M2_82
56.5
M2_83
55.8
M2_84
55.4
M2_85
53.4
M2_86
53.2
M2_87
52.4
M2_88
51.2
M2_89
50.4
M2_90
48.4
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