HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:19.4 nTPM
GTEx:40.9 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:51.9 nTPM
Allen mouse:8.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004428Antibody HPA007569
Glial cells MediumMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 19.4
Sample id Sample description nTPM
Hippocampus
nTPM: 16.9
1898 Male, age 80, left hemisphere 23.5
1911 Female, age 85, right hemisphere 16.9
2529 Female, age 94, left hemisphere 15.7
1855 Male, age 76, left hemisphere 15.5
2621 Female, age 67, right hemisphere 14.9
2148 Female, age 91, left hemisphere 14.7
Dentate gyrus
nTPM: 16.4
2010 Male, age 76, both hemispheres 20.3
2528 Male, age 74, both hemispheres 18.4
2246 Female, age 85, both hemispheres 17.0
1927 Female, age 91, both hemispheres 16.7
2530 Female, age 94, left hemisphere 14.4
2531 Female, age 67, both hemispheres 11.5
Entorhinal gyrus
nTPM: 14.4
1938 Female, age 85, left hemisphere 19.2
2117 Female, age 91, right hemisphere 19.1
2764 Male, age 80, right hemisphere 14.7
1787 Male, age 76, left hemisphere 13.0
2686 Male, age 75, right hemisphere 12.4
2613 Female, age 94, left hemisphere 7.9
Hippocampus, CA1
nTPM: 16.5
2749 Male, age 80, left hemisphere 18.9
2082 Female, age 91, right hemisphere 18.4
1873 Female, age 85, both hemispheres 16.3
2527 Male, age 74, both hemispheres 15.0
2045 Male, age 76, both hemispheres 14.0
Hippocampus, CA2
nTPM: 19.4
2249 Male, age 74, both hemispheres 33.7
1892 Male, age 76, both hemispheres 20.9
1963 Male, age 80, left hemisphere 18.4
1940 Female, age 85, left hemisphere 16.2
2113 Female, age 91, right hemisphere 15.7
2437 Female, age 94, left hemisphere 11.3
Hippocampus, CA3
nTPM: 18.7
2436 Male, age 74, both hemispheres 31.8
1891 Female, age 85, both hemispheres 21.0
1867 Male, age 76, both hemispheres 20.1
2620 Female, age 94, left hemisphere 14.3
2137 Male, age 80, left hemisphere 13.0
2861 Female, age 67, both hemispheres 11.9
Parahippocampal cortex
nTPM: 15.2
2250 Female, age 67, right hemisphere 19.9
1850 Male, age 80, both hemispheres 19.2
1990 Female, age 91, right hemisphere 17.6
2245 Female, age 91, both hemispheres 16.1
1933 Female, age 85, both hemispheres 14.9
2018 Male, age 76, both hemispheres 13.9
2692 Male, age 74, both hemispheres 13.5
2693 Female, age 94, both hemispheres 12.8
2532 Female, age 72, left hemisphere 12.1
2622 Female, age 67, right hemisphere 11.8
Perirhinal gyrus
nTPM: 16.6
1841 Female, age 85, right hemisphere 20.7
1847 Female, age 91, left hemisphere 19.4
1794 Male, age 80, right hemisphere 16.5
2848 Male, age 76, right hemisphere 16.4
2521 Female, age 94, right hemisphere 9.8
Subiculum
nTPM: 15.9
1977 Female, age 85, both hemispheres 18.3
2729 Female, age 91, right hemisphere 17.9
1901 Male, age 80, both hemispheres 16.5
2438 Female, age 94, left hemisphere 15.7
2042 Male, age 76, both hemispheres 14.0
2619 Male, age 74, both hemispheres 13.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.9
Samples: 255

Max nTPM: 77.0
Min nTPM: 14.7
Std nTPM: 8.5
Median nTPM: 39.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 77.0
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 73.2
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 65.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 64.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 63.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 62.9
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 61.9
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 61.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 61.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 59.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 59.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.0
FF:10169-103B7 60 years, female 78.9
FF:10153-102I9 76 years, female 75.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 36.2
Pig sample Sample description nTPM
Subiculum
nTPM: 36.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 29.2
Sample A Female 40.1
Sample B Female 37.7
Sample C Male 29.2
Sample D Male 37.2
Dorsal hippocampus
nTPM: 36.2
Samples: 4

Max nTPM: 41.5
Min nTPM: 30.4
Sample A Female 41.5
Sample B Female 37.1
Sample C Male 35.8
Sample D Male 30.4
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 36.5
Min nTPM: 26.8
Sample A Female 28.7
Sample B Female 36.5
Sample C Male 29.3
Sample D Male 26.8
Ventral hippocampus
nTPM: 34.5
Samples: 4

Max nTPM: 39.2
Min nTPM: 28.3
Sample A Female 39.2
Sample B Female 32.6
Sample C Male 28.3
Sample D Male 37.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 51.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.6
Samples: 4

Max nTPM: 55.6
Min nTPM: 44.2
Sample A Male 49.8
Sample B Male 52.8
Sample C Female 55.6
Sample D Female 44.2
Hippocampal formation
nTPM: 51.9
Samples: 4

Max nTPM: 60.5
Min nTPM: 46.1
Sample A Male 60.5
Sample B Male 48.8
Sample C Female 46.1
Sample D Female 52.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
71836840 Antisense, RP_051017_02_C03, Mouse strain C57BL/6J (56 days, male) 12.9
68795396 Antisense, RP_041116_01_C08, Mouse strain C57BL/6J (56 days, male) 4.8

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