A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.3
nTPM
Monaco:
226.0
nTPM
Schmiedel:
12.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
HPA sample
nTPM
Memory B-cell nTPM: 29.3
Samples: 6
Max nTPM: 39.0
Min nTPM: 10.6
P10809_1017
34.7
P10809_1025
35.7
P10809_1044
10.6
P10809_1063
29.4
P10809_1092
26.1
P10809_1105
39.0
Naive B-cell nTPM: 13.8
Samples: 6
Max nTPM: 19.2
Min nTPM: 10.4
P10809_1011
10.4
P10809_1029
15.0
P10809_1048
19.2
P10809_1067
11.9
P10809_1091
12.1
P10809_1104
14.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
226.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.3
Samples: 4
Max nTPM: 108.2
Min nTPM: 34.3
RHH5310_R3677
108.2
RHH5218_R3590
34.3
RHH5247_R3619
57.4
RHH5276_R3648
53.1
Naive B-cell nTPM: 26.6
Samples: 4
Max nTPM: 29.4
Min nTPM: 24.0
RHH5308_R3675
27.1
RHH5216_R3588
25.9
RHH5245_R3617
24.0
RHH5274_R3646
29.4
Non-switched memory B-cell nTPM: 47.8
Samples: 4
Max nTPM: 67.6
Min nTPM: 32.1
RHH5309_R3676
67.6
RHH5217_R3589
47.6
RHH5246_R3618
43.9
RHH5275_R3647
32.1
Plasmablast nTPM: 226.0
Samples: 4
Max nTPM: 266.4
Min nTPM: 199.8
RHH5312_R3679
207.3
RHH5220_R3592
230.3
RHH5249_R3621
266.4
RHH5278_R3650
199.8
Switched memory B-cell nTPM: 77.6
Samples: 4
Max nTPM: 102.2
Min nTPM: 50.8
RHH5311_R3678
91.1
RHH5219_R3591
66.1
RHH5248_R3620
102.2
RHH5277_R3649
50.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.4
Schmiedel sample id
TPM
Naive B-cell TPM: 12.4
Samples: 91
Max TPM: 21.4
Min TPM: 7.6
B_CELL_NAIVE_1
21.4
B_CELL_NAIVE_2
18.7
B_CELL_NAIVE_3
17.7
B_CELL_NAIVE_4
17.7
B_CELL_NAIVE_5
17.3
B_CELL_NAIVE_6
16.8
B_CELL_NAIVE_7
15.9
B_CELL_NAIVE_8
15.4
B_CELL_NAIVE_9
15.3
B_CELL_NAIVE_10
15.3
B_CELL_NAIVE_11
15.1
B_CELL_NAIVE_12
15.1
B_CELL_NAIVE_13
14.8
B_CELL_NAIVE_14
14.6
B_CELL_NAIVE_15
14.6
B_CELL_NAIVE_16
14.5
B_CELL_NAIVE_17
14.3
B_CELL_NAIVE_18
14.3
B_CELL_NAIVE_19
14.2
B_CELL_NAIVE_20
14.1
B_CELL_NAIVE_21
14.1
B_CELL_NAIVE_22
14.0
B_CELL_NAIVE_23
13.9
B_CELL_NAIVE_24
13.7
B_CELL_NAIVE_25
13.6
B_CELL_NAIVE_26
13.5
B_CELL_NAIVE_27
13.5
B_CELL_NAIVE_28
13.2
B_CELL_NAIVE_29
13.2
B_CELL_NAIVE_30
13.0
B_CELL_NAIVE_31
13.0
B_CELL_NAIVE_32
12.9
B_CELL_NAIVE_33
12.9
B_CELL_NAIVE_34
12.8
B_CELL_NAIVE_35
12.8
B_CELL_NAIVE_36
12.7
B_CELL_NAIVE_37
12.6
B_CELL_NAIVE_38
12.6
B_CELL_NAIVE_39
12.5
B_CELL_NAIVE_40
12.5
B_CELL_NAIVE_41
12.5
B_CELL_NAIVE_42
12.5
B_CELL_NAIVE_43
12.4
B_CELL_NAIVE_44
12.4
B_CELL_NAIVE_45
12.4
B_CELL_NAIVE_46
12.3
B_CELL_NAIVE_47
12.3
B_CELL_NAIVE_48
12.3
B_CELL_NAIVE_49
12.3
B_CELL_NAIVE_50
12.2
B_CELL_NAIVE_51
12.1
B_CELL_NAIVE_52
11.9
B_CELL_NAIVE_53
11.9
B_CELL_NAIVE_54
11.9
B_CELL_NAIVE_55
11.8
B_CELL_NAIVE_56
11.7
B_CELL_NAIVE_57
11.6
B_CELL_NAIVE_58
11.6
B_CELL_NAIVE_59
11.4
B_CELL_NAIVE_60
11.4
B_CELL_NAIVE_61
11.3
B_CELL_NAIVE_62
11.3
B_CELL_NAIVE_63
11.2
B_CELL_NAIVE_64
11.1
B_CELL_NAIVE_65
11.0
B_CELL_NAIVE_66
11.0
B_CELL_NAIVE_67
10.9
B_CELL_NAIVE_68
10.8
B_CELL_NAIVE_69
10.8
B_CELL_NAIVE_70
10.7
B_CELL_NAIVE_71
10.7
B_CELL_NAIVE_72
10.6
B_CELL_NAIVE_73
10.6
B_CELL_NAIVE_74
10.3
B_CELL_NAIVE_75
10.2
B_CELL_NAIVE_76
10.0
B_CELL_NAIVE_77
9.9
B_CELL_NAIVE_78
9.9
B_CELL_NAIVE_79
9.8
B_CELL_NAIVE_80
9.8
B_CELL_NAIVE_81
9.7
B_CELL_NAIVE_82
9.7
B_CELL_NAIVE_83
9.6
B_CELL_NAIVE_84
9.4
B_CELL_NAIVE_85
9.1
B_CELL_NAIVE_86
8.9
B_CELL_NAIVE_87
8.6
B_CELL_NAIVE_88
8.6
B_CELL_NAIVE_89
8.4
B_CELL_NAIVE_90
8.2
B_CELL_NAIVE_91
7.6
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