A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.9
nTPM
Monaco:
58.7
nTPM
Schmiedel:
15.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.9
HPA sample
nTPM
Classical monocyte nTPM: 17.1
Samples: 6
Max nTPM: 18.8
Min nTPM: 14.7
P10809_1003
17.5
P10809_1020
18.8
P10809_1039
18.6
P10809_1058
14.7
P10809_1080
17.5
P10809_1107
15.3
Intermediate monocyte nTPM: 25.5
Samples: 6
Max nTPM: 32.6
Min nTPM: 15.8
P10809_1004
32.6
P10809_1023
28.2
P10809_1042
28.4
P10809_1061
15.8
P10809_1081
22.3
P10809_1108
25.5
Non-classical monocyte nTPM: 27.9
Samples: 5
Max nTPM: 41.1
Min nTPM: 18.0
P10809_1005
26.7
P10809_1053
29.5
P10809_1072
41.1
P10809_1082
18.0
P10809_1109
24.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.7
Monaco sample
nTPM
Classical monocyte nTPM: 48.5
Samples: 4
Max nTPM: 62.3
Min nTPM: 38.1
RHH5313_R3680
62.3
RHH5221_R3593
38.1
RHH5250_R3622
43.2
RHH5279_R3651
50.2
Intermediate monocyte nTPM: 49.2
Samples: 4
Max nTPM: 57.9
Min nTPM: 40.9
RHH5314_R3681
57.9
RHH5222_R3594
40.9
RHH5251_R3623
51.2
RHH5280_R3652
46.7
Non-classical monocyte nTPM: 58.7
Samples: 4
Max nTPM: 66.6
Min nTPM: 45.5
RHH5315_R3682
58.2
RHH5223_R3595
45.5
RHH5252_R3624
64.5
RHH5281_R3653
66.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Schmiedel sample id
TPM
Classical monocyte TPM: 10.1
Samples: 91
Max TPM: 13.8
Min TPM: 6.5
MONOCYTES_1
13.8
MONOCYTES_2
13.5
MONOCYTES_3
13.3
MONOCYTES_4
13.0
MONOCYTES_5
12.7
MONOCYTES_6
12.7
MONOCYTES_7
12.6
MONOCYTES_8
12.6
MONOCYTES_9
12.5
MONOCYTES_10
12.4
MONOCYTES_11
12.4
MONOCYTES_12
12.3
MONOCYTES_13
12.3
MONOCYTES_14
12.3
MONOCYTES_15
12.2
MONOCYTES_16
12.2
MONOCYTES_17
12.0
MONOCYTES_18
11.9
MONOCYTES_19
11.9
MONOCYTES_20
11.8
MONOCYTES_21
11.7
MONOCYTES_22
11.7
MONOCYTES_23
11.7
MONOCYTES_24
11.4
MONOCYTES_25
11.3
MONOCYTES_26
11.3
MONOCYTES_27
11.2
MONOCYTES_28
11.2
MONOCYTES_29
11.0
MONOCYTES_30
10.8
MONOCYTES_31
10.8
MONOCYTES_32
10.7
MONOCYTES_33
10.7
MONOCYTES_34
10.7
MONOCYTES_35
10.6
MONOCYTES_36
10.6
MONOCYTES_37
10.5
MONOCYTES_38
10.5
MONOCYTES_39
10.4
MONOCYTES_40
10.3
MONOCYTES_41
10.3
MONOCYTES_42
10.2
MONOCYTES_43
10.2
MONOCYTES_44
10.2
MONOCYTES_45
10.2
MONOCYTES_46
10.0
MONOCYTES_47
10.0
MONOCYTES_48
10.0
MONOCYTES_49
9.9
MONOCYTES_50
9.9
MONOCYTES_51
9.8
MONOCYTES_52
9.8
MONOCYTES_53
9.5
MONOCYTES_54
9.5
MONOCYTES_55
9.4
MONOCYTES_56
9.3
MONOCYTES_57
9.2
MONOCYTES_58
9.2
MONOCYTES_59
9.1
MONOCYTES_60
9.1
MONOCYTES_61
9.1
MONOCYTES_62
9.0
MONOCYTES_63
9.0
MONOCYTES_64
9.0
MONOCYTES_65
8.9
MONOCYTES_66
8.9
MONOCYTES_67
8.9
MONOCYTES_68
8.9
MONOCYTES_69
8.8
MONOCYTES_70
8.7
MONOCYTES_71
8.7
MONOCYTES_72
8.6
MONOCYTES_73
8.5
MONOCYTES_74
8.3
MONOCYTES_75
8.3
MONOCYTES_76
8.2
MONOCYTES_77
8.2
MONOCYTES_78
8.2
MONOCYTES_79
8.2
MONOCYTES_80
8.1
MONOCYTES_81
7.6
MONOCYTES_82
7.5
MONOCYTES_83
7.5
MONOCYTES_84
7.5
MONOCYTES_85
7.4
MONOCYTES_86
7.4
MONOCYTES_87
7.3
MONOCYTES_88
7.2
MONOCYTES_89
7.0
MONOCYTES_90
6.7
MONOCYTES_91
6.5
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Non-classical monocyte TPM: 15.9
Samples: 90
Max TPM: 22.2
Min TPM: 11.2
M2_1
22.2
M2_2
21.6
M2_3
21.1
M2_4
21.0
M2_5
20.7
M2_6
19.8
M2_7
19.7
M2_8
19.6
M2_9
19.5
M2_10
19.3
M2_11
19.2
M2_12
19.1
M2_13
18.7
M2_14
18.7
M2_15
18.6
M2_16
18.4
M2_17
18.3
M2_18
18.1
M2_19
18.1
M2_20
18.0
M2_21
18.0
M2_22
18.0
M2_23
17.9
M2_24
17.8
M2_25
17.7
M2_26
17.6
M2_27
17.5
M2_28
17.5
M2_29
17.5
M2_30
17.4
M2_31
17.3
M2_32
17.1
M2_33
17.0
M2_34
16.9
M2_35
16.8
M2_36
16.6
M2_37
16.4
M2_38
16.4
M2_39
16.3
M2_40
16.2
M2_41
16.0
M2_42
16.0
M2_43
15.8
M2_44
15.8
M2_45
15.5
M2_46
15.4
M2_47
15.4
M2_48
15.4
M2_49
15.3
M2_50
15.3
M2_51
15.3
M2_52
15.3
M2_53
15.1
M2_54
15.1
M2_55
14.9
M2_56
14.8
M2_57
14.8
M2_58
14.8
M2_59
14.7
M2_60
14.7
M2_61
14.7
M2_62
14.5
M2_63
14.4
M2_64
14.4
M2_65
14.3
M2_66
14.2
M2_67
14.2
M2_68
14.1
M2_69
14.1
M2_70
14.0
M2_71
13.8
M2_72
13.8
M2_73
13.6
M2_74
13.5
M2_75
13.4
M2_76
13.1
M2_77
12.9
M2_78
12.9
M2_79
12.8
M2_80
12.8
M2_81
12.7
M2_82
12.6
M2_83
12.4
M2_84
12.2
M2_85
11.9
M2_86
11.9
M2_87
11.7
M2_88
11.5
M2_89
11.3
M2_90
11.2
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