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BETA
  • SUMMARY

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  • BRAIN

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  • IMMUNE

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  • SLC25A3
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:298.4 nTPM
Monaco:1404.8 nTPM
Schmiedel:201.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

298.4
HPA sample nTPM
Memory B-cell
nTPM: 298.4
Samples: 6

Max nTPM: 346.7
Min nTPM: 238.8
P10809_1017 289.7
P10809_1025 346.7
P10809_1044 314.6
P10809_1063 238.8
P10809_1092 301.2
P10809_1105 299.2
Naive B-cell
nTPM: 222.3
Samples: 6

Max nTPM: 399.1
Min nTPM: 152.0
P10809_1011 152.0
P10809_1029 223.8
P10809_1048 399.1
P10809_1067 156.7
P10809_1091 195.1
P10809_1104 207.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1404.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 528.9
Samples: 4

Max nTPM: 904.4
Min nTPM: 316.9
RHH5310_R3677 904.4
RHH5218_R3590 488.8
RHH5247_R3619 405.4
RHH5276_R3648 316.9
Naive B-cell
nTPM: 387.4
Samples: 4

Max nTPM: 573.2
Min nTPM: 199.9
RHH5308_R3675 573.2
RHH5216_R3588 375.6
RHH5245_R3617 199.9
RHH5274_R3646 400.8
Non-switched memory B-cell
nTPM: 490.0
Samples: 4

Max nTPM: 607.0
Min nTPM: 329.3
RHH5309_R3676 607.0
RHH5217_R3589 496.3
RHH5246_R3618 527.3
RHH5275_R3647 329.3
Plasmablast
nTPM: 1404.8
Samples: 4

Max nTPM: 1656.5
Min nTPM: 1138.4
RHH5312_R3679 1441.3
RHH5220_R3592 1383.1
RHH5249_R3621 1656.5
RHH5278_R3650 1138.4
Switched memory B-cell
nTPM: 606.8
Samples: 4

Max nTPM: 758.8
Min nTPM: 409.1
RHH5311_R3678 758.8
RHH5219_R3591 596.1
RHH5248_R3620 663.1
RHH5277_R3649 409.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

201.8
Schmiedel sample id TPM
Naive B-cell
TPM: 201.8
Samples: 91

Max TPM: 281.1
Min TPM: 92.8
B_CELL_NAIVE_1 281.1
B_CELL_NAIVE_2 271.8
B_CELL_NAIVE_3 271.2
B_CELL_NAIVE_4 263.1
B_CELL_NAIVE_5 262.0
B_CELL_NAIVE_6 256.8
B_CELL_NAIVE_7 247.8
B_CELL_NAIVE_8 246.4
B_CELL_NAIVE_9 243.8
B_CELL_NAIVE_10 239.2
B_CELL_NAIVE_11 239.1
B_CELL_NAIVE_12 237.9
B_CELL_NAIVE_13 236.0
B_CELL_NAIVE_14 231.4
B_CELL_NAIVE_15 230.3
B_CELL_NAIVE_16 229.8
B_CELL_NAIVE_17 229.7
B_CELL_NAIVE_18 228.4
B_CELL_NAIVE_19 227.1
B_CELL_NAIVE_20 225.0
B_CELL_NAIVE_21 223.6
B_CELL_NAIVE_22 222.3
B_CELL_NAIVE_23 221.9
B_CELL_NAIVE_24 221.7
B_CELL_NAIVE_25 218.6
B_CELL_NAIVE_26 217.7
B_CELL_NAIVE_27 214.8
B_CELL_NAIVE_28 214.6
B_CELL_NAIVE_29 214.6
B_CELL_NAIVE_30 213.5
B_CELL_NAIVE_31 212.5
B_CELL_NAIVE_32 212.2
B_CELL_NAIVE_33 211.8
B_CELL_NAIVE_34 211.4
B_CELL_NAIVE_35 210.3
B_CELL_NAIVE_36 208.0
B_CELL_NAIVE_37 207.4
B_CELL_NAIVE_38 207.1
B_CELL_NAIVE_39 206.9
B_CELL_NAIVE_40 205.4
B_CELL_NAIVE_41 205.2
B_CELL_NAIVE_42 204.2
B_CELL_NAIVE_43 204.0
B_CELL_NAIVE_44 202.5
B_CELL_NAIVE_45 202.0
B_CELL_NAIVE_46 202.0
B_CELL_NAIVE_47 200.9
B_CELL_NAIVE_48 200.4
B_CELL_NAIVE_49 200.1
B_CELL_NAIVE_50 199.3
B_CELL_NAIVE_51 198.7
B_CELL_NAIVE_52 198.3
B_CELL_NAIVE_53 197.6
B_CELL_NAIVE_54 197.4
B_CELL_NAIVE_55 195.2
B_CELL_NAIVE_56 193.4
B_CELL_NAIVE_57 193.2
B_CELL_NAIVE_58 192.8
B_CELL_NAIVE_59 190.0
B_CELL_NAIVE_60 189.9
B_CELL_NAIVE_61 188.6
B_CELL_NAIVE_62 188.2
B_CELL_NAIVE_63 187.0
B_CELL_NAIVE_64 186.8
B_CELL_NAIVE_65 185.4
B_CELL_NAIVE_66 184.8
B_CELL_NAIVE_67 182.8
B_CELL_NAIVE_68 181.2
B_CELL_NAIVE_69 179.4
B_CELL_NAIVE_70 177.9
B_CELL_NAIVE_71 175.6
B_CELL_NAIVE_72 174.7
B_CELL_NAIVE_73 174.6
B_CELL_NAIVE_74 173.3
B_CELL_NAIVE_75 172.1
B_CELL_NAIVE_76 172.1
B_CELL_NAIVE_77 171.5
B_CELL_NAIVE_78 171.0
B_CELL_NAIVE_79 169.0
B_CELL_NAIVE_80 168.4
B_CELL_NAIVE_81 167.3
B_CELL_NAIVE_82 167.1
B_CELL_NAIVE_83 165.3
B_CELL_NAIVE_84 162.7
B_CELL_NAIVE_85 160.5
B_CELL_NAIVE_86 159.2
B_CELL_NAIVE_87 152.5
B_CELL_NAIVE_88 148.7
B_CELL_NAIVE_89 140.7
B_CELL_NAIVE_90 138.3
B_CELL_NAIVE_91 92.8
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