A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
298.4
nTPM
Monaco:
1404.8
nTPM
Schmiedel:
201.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
298.4
HPA sample
nTPM
Memory B-cell nTPM: 298.4
Samples: 6
Max nTPM: 346.7
Min nTPM: 238.8
P10809_1017
289.7
P10809_1025
346.7
P10809_1044
314.6
P10809_1063
238.8
P10809_1092
301.2
P10809_1105
299.2
Naive B-cell nTPM: 222.3
Samples: 6
Max nTPM: 399.1
Min nTPM: 152.0
P10809_1011
152.0
P10809_1029
223.8
P10809_1048
399.1
P10809_1067
156.7
P10809_1091
195.1
P10809_1104
207.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1404.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 528.9
Samples: 4
Max nTPM: 904.4
Min nTPM: 316.9
RHH5310_R3677
904.4
RHH5218_R3590
488.8
RHH5247_R3619
405.4
RHH5276_R3648
316.9
Naive B-cell nTPM: 387.4
Samples: 4
Max nTPM: 573.2
Min nTPM: 199.9
RHH5308_R3675
573.2
RHH5216_R3588
375.6
RHH5245_R3617
199.9
RHH5274_R3646
400.8
Non-switched memory B-cell nTPM: 490.0
Samples: 4
Max nTPM: 607.0
Min nTPM: 329.3
RHH5309_R3676
607.0
RHH5217_R3589
496.3
RHH5246_R3618
527.3
RHH5275_R3647
329.3
Plasmablast nTPM: 1404.8
Samples: 4
Max nTPM: 1656.5
Min nTPM: 1138.4
RHH5312_R3679
1441.3
RHH5220_R3592
1383.1
RHH5249_R3621
1656.5
RHH5278_R3650
1138.4
Switched memory B-cell nTPM: 606.8
Samples: 4
Max nTPM: 758.8
Min nTPM: 409.1
RHH5311_R3678
758.8
RHH5219_R3591
596.1
RHH5248_R3620
663.1
RHH5277_R3649
409.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
201.8
Schmiedel sample id
TPM
Naive B-cell TPM: 201.8
Samples: 91
Max TPM: 281.1
Min TPM: 92.8
B_CELL_NAIVE_1
281.1
B_CELL_NAIVE_2
271.8
B_CELL_NAIVE_3
271.2
B_CELL_NAIVE_4
263.1
B_CELL_NAIVE_5
262.0
B_CELL_NAIVE_6
256.8
B_CELL_NAIVE_7
247.8
B_CELL_NAIVE_8
246.4
B_CELL_NAIVE_9
243.8
B_CELL_NAIVE_10
239.2
B_CELL_NAIVE_11
239.1
B_CELL_NAIVE_12
237.9
B_CELL_NAIVE_13
236.0
B_CELL_NAIVE_14
231.4
B_CELL_NAIVE_15
230.3
B_CELL_NAIVE_16
229.8
B_CELL_NAIVE_17
229.7
B_CELL_NAIVE_18
228.4
B_CELL_NAIVE_19
227.1
B_CELL_NAIVE_20
225.0
B_CELL_NAIVE_21
223.6
B_CELL_NAIVE_22
222.3
B_CELL_NAIVE_23
221.9
B_CELL_NAIVE_24
221.7
B_CELL_NAIVE_25
218.6
B_CELL_NAIVE_26
217.7
B_CELL_NAIVE_27
214.8
B_CELL_NAIVE_28
214.6
B_CELL_NAIVE_29
214.6
B_CELL_NAIVE_30
213.5
B_CELL_NAIVE_31
212.5
B_CELL_NAIVE_32
212.2
B_CELL_NAIVE_33
211.8
B_CELL_NAIVE_34
211.4
B_CELL_NAIVE_35
210.3
B_CELL_NAIVE_36
208.0
B_CELL_NAIVE_37
207.4
B_CELL_NAIVE_38
207.1
B_CELL_NAIVE_39
206.9
B_CELL_NAIVE_40
205.4
B_CELL_NAIVE_41
205.2
B_CELL_NAIVE_42
204.2
B_CELL_NAIVE_43
204.0
B_CELL_NAIVE_44
202.5
B_CELL_NAIVE_45
202.0
B_CELL_NAIVE_46
202.0
B_CELL_NAIVE_47
200.9
B_CELL_NAIVE_48
200.4
B_CELL_NAIVE_49
200.1
B_CELL_NAIVE_50
199.3
B_CELL_NAIVE_51
198.7
B_CELL_NAIVE_52
198.3
B_CELL_NAIVE_53
197.6
B_CELL_NAIVE_54
197.4
B_CELL_NAIVE_55
195.2
B_CELL_NAIVE_56
193.4
B_CELL_NAIVE_57
193.2
B_CELL_NAIVE_58
192.8
B_CELL_NAIVE_59
190.0
B_CELL_NAIVE_60
189.9
B_CELL_NAIVE_61
188.6
B_CELL_NAIVE_62
188.2
B_CELL_NAIVE_63
187.0
B_CELL_NAIVE_64
186.8
B_CELL_NAIVE_65
185.4
B_CELL_NAIVE_66
184.8
B_CELL_NAIVE_67
182.8
B_CELL_NAIVE_68
181.2
B_CELL_NAIVE_69
179.4
B_CELL_NAIVE_70
177.9
B_CELL_NAIVE_71
175.6
B_CELL_NAIVE_72
174.7
B_CELL_NAIVE_73
174.6
B_CELL_NAIVE_74
173.3
B_CELL_NAIVE_75
172.1
B_CELL_NAIVE_76
172.1
B_CELL_NAIVE_77
171.5
B_CELL_NAIVE_78
171.0
B_CELL_NAIVE_79
169.0
B_CELL_NAIVE_80
168.4
B_CELL_NAIVE_81
167.3
B_CELL_NAIVE_82
167.1
B_CELL_NAIVE_83
165.3
B_CELL_NAIVE_84
162.7
B_CELL_NAIVE_85
160.5
B_CELL_NAIVE_86
159.2
B_CELL_NAIVE_87
152.5
B_CELL_NAIVE_88
148.7
B_CELL_NAIVE_89
140.7
B_CELL_NAIVE_90
138.3
B_CELL_NAIVE_91
92.8
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