A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
545.7
nTPM
Monaco:
1026.5
nTPM
Schmiedel:
238.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
545.7
HPA sample
nTPM
Classical monocyte nTPM: 408.6
Samples: 6
Max nTPM: 612.4
Min nTPM: 270.3
P10809_1003
612.4
P10809_1020
420.4
P10809_1039
480.9
P10809_1058
270.3
P10809_1080
317.6
P10809_1107
349.9
Intermediate monocyte nTPM: 519.5
Samples: 6
Max nTPM: 652.0
Min nTPM: 341.5
P10809_1004
485.6
P10809_1023
652.0
P10809_1042
611.2
P10809_1061
341.5
P10809_1081
408.1
P10809_1108
618.5
Non-classical monocyte nTPM: 545.7
Samples: 5
Max nTPM: 640.1
Min nTPM: 413.1
P10809_1005
570.3
P10809_1053
618.1
P10809_1072
487.1
P10809_1082
413.1
P10809_1109
640.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1026.5
Monaco sample
nTPM
Classical monocyte nTPM: 875.0
Samples: 4
Max nTPM: 1235.5
Min nTPM: 571.5
RHH5313_R3680
874.7
RHH5221_R3593
571.5
RHH5250_R3622
1235.5
RHH5279_R3651
818.4
Intermediate monocyte nTPM: 1026.5
Samples: 4
Max nTPM: 1364.2
Min nTPM: 527.6
RHH5314_R3681
1364.2
RHH5222_R3594
527.6
RHH5251_R3623
938.2
RHH5280_R3652
1275.8
Non-classical monocyte nTPM: 861.0
Samples: 4
Max nTPM: 1144.9
Min nTPM: 407.4
RHH5315_R3682
1031.1
RHH5223_R3595
407.4
RHH5252_R3624
860.5
RHH5281_R3653
1144.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.2
Schmiedel sample id
TPM
Classical monocyte TPM: 184.2
Samples: 91
Max TPM: 251.8
Min TPM: 139.4
MONOCYTES_1
251.8
MONOCYTES_2
227.8
MONOCYTES_3
218.9
MONOCYTES_4
216.9
MONOCYTES_5
216.2
MONOCYTES_6
215.4
MONOCYTES_7
213.7
MONOCYTES_8
212.3
MONOCYTES_9
211.3
MONOCYTES_10
210.7
MONOCYTES_11
207.4
MONOCYTES_12
207.3
MONOCYTES_13
207.2
MONOCYTES_14
206.7
MONOCYTES_15
206.2
MONOCYTES_16
204.8
MONOCYTES_17
204.4
MONOCYTES_18
201.6
MONOCYTES_19
200.2
MONOCYTES_20
199.9
MONOCYTES_21
198.7
MONOCYTES_22
197.8
MONOCYTES_23
196.7
MONOCYTES_24
196.0
MONOCYTES_25
195.1
MONOCYTES_26
194.2
MONOCYTES_27
193.7
MONOCYTES_28
193.5
MONOCYTES_29
193.0
MONOCYTES_30
192.0
MONOCYTES_31
191.7
MONOCYTES_32
191.5
MONOCYTES_33
191.5
MONOCYTES_34
191.0
MONOCYTES_35
189.5
MONOCYTES_36
188.8
MONOCYTES_37
187.5
MONOCYTES_38
186.9
MONOCYTES_39
186.3
MONOCYTES_40
185.3
MONOCYTES_41
184.7
MONOCYTES_42
184.3
MONOCYTES_43
184.2
MONOCYTES_44
183.7
MONOCYTES_45
183.4
MONOCYTES_46
182.7
MONOCYTES_47
182.2
MONOCYTES_48
182.1
MONOCYTES_49
181.5
MONOCYTES_50
179.6
MONOCYTES_51
179.0
MONOCYTES_52
178.8
MONOCYTES_53
178.6
MONOCYTES_54
178.0
MONOCYTES_55
177.5
MONOCYTES_56
176.5
MONOCYTES_57
176.4
MONOCYTES_58
176.4
MONOCYTES_59
175.8
MONOCYTES_60
175.6
MONOCYTES_61
175.0
MONOCYTES_62
174.6
MONOCYTES_63
174.5
MONOCYTES_64
173.7
MONOCYTES_65
172.9
MONOCYTES_66
172.5
MONOCYTES_67
172.4
MONOCYTES_68
172.2
MONOCYTES_69
172.1
MONOCYTES_70
169.7
MONOCYTES_71
169.4
MONOCYTES_72
168.7
MONOCYTES_73
168.5
MONOCYTES_74
167.5
MONOCYTES_75
166.5
MONOCYTES_76
166.0
MONOCYTES_77
165.3
MONOCYTES_78
164.6
MONOCYTES_79
163.8
MONOCYTES_80
163.7
MONOCYTES_81
163.5
MONOCYTES_82
162.0
MONOCYTES_83
160.1
MONOCYTES_84
158.8
MONOCYTES_85
157.2
MONOCYTES_86
152.8
MONOCYTES_87
151.6
MONOCYTES_88
149.6
MONOCYTES_89
148.2
MONOCYTES_90
146.6
MONOCYTES_91
139.4
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Non-classical monocyte TPM: 238.2
Samples: 90
Max TPM: 303.2
Min TPM: 171.6
M2_1
303.2
M2_2
294.5
M2_3
294.2
M2_4
292.0
M2_5
290.1
M2_6
285.1
M2_7
285.0
M2_8
284.5
M2_9
282.9
M2_10
282.9
M2_11
282.3
M2_12
280.7
M2_13
279.6
M2_14
279.3
M2_15
277.5
M2_16
275.4
M2_17
273.7
M2_18
266.9
M2_19
264.9
M2_20
264.8
M2_21
261.0
M2_22
257.4
M2_23
256.0
M2_24
255.7
M2_25
252.0
M2_26
251.9
M2_27
251.6
M2_28
251.5
M2_29
250.2
M2_30
250.0
M2_31
249.8
M2_32
248.2
M2_33
247.8
M2_34
247.1
M2_35
246.6
M2_36
245.0
M2_37
244.5
M2_38
242.1
M2_39
241.7
M2_40
241.4
M2_41
240.9
M2_42
240.7
M2_43
240.4
M2_44
239.8
M2_45
236.5
M2_46
236.0
M2_47
235.7
M2_48
234.9
M2_49
234.5
M2_50
234.0
M2_51
231.5
M2_52
231.2
M2_53
230.3
M2_54
229.4
M2_55
227.6
M2_56
227.3
M2_57
225.8
M2_58
225.4
M2_59
223.7
M2_60
223.5
M2_61
223.1
M2_62
222.8
M2_63
222.1
M2_64
221.4
M2_65
220.2
M2_66
218.4
M2_67
218.1
M2_68
217.3
M2_69
217.1
M2_70
215.9
M2_71
214.1
M2_72
213.4
M2_73
213.3
M2_74
212.7
M2_75
208.8
M2_76
208.4
M2_77
207.2
M2_78
207.1
M2_79
204.5
M2_80
202.7
M2_81
202.2
M2_82
198.6
M2_83
198.2
M2_84
185.6
M2_85
185.4
M2_86
184.5
M2_87
181.2
M2_88
180.2
M2_89
180.1
M2_90
171.6
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