A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.9
nTPM
Monaco:
90.2
nTPM
Schmiedel:
828.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
HPA sample
nTPM
Classical monocyte nTPM: 9.9
Samples: 6
Max nTPM: 12.5
Min nTPM: 8.4
P10809_1003
12.5
P10809_1020
8.4
P10809_1039
8.5
P10809_1058
9.0
P10809_1080
9.2
P10809_1107
11.7
Intermediate monocyte nTPM: 7.4
Samples: 6
Max nTPM: 9.6
Min nTPM: 4.6
P10809_1004
7.7
P10809_1023
4.6
P10809_1042
8.4
P10809_1061
9.6
P10809_1081
7.7
P10809_1108
6.1
Non-classical monocyte nTPM: 6.4
Samples: 5
Max nTPM: 8.1
Min nTPM: 4.3
P10809_1005
8.1
P10809_1053
7.2
P10809_1072
7.4
P10809_1082
4.3
P10809_1109
5.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.2
Monaco sample
nTPM
Classical monocyte nTPM: 83.1
Samples: 4
Max nTPM: 110.8
Min nTPM: 54.3
RHH5313_R3680
94.8
RHH5221_R3593
54.3
RHH5250_R3622
72.5
RHH5279_R3651
110.8
Intermediate monocyte nTPM: 90.2
Samples: 4
Max nTPM: 110.1
Min nTPM: 73.6
RHH5314_R3681
73.6
RHH5222_R3594
110.1
RHH5251_R3623
92.2
RHH5280_R3652
84.8
Non-classical monocyte nTPM: 86.7
Samples: 4
Max nTPM: 96.0
Min nTPM: 70.4
RHH5315_R3682
70.4
RHH5223_R3595
92.3
RHH5252_R3624
96.0
RHH5281_R3653
88.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
828.0
Schmiedel sample id
TPM
Classical monocyte TPM: 828.0
Samples: 91
Max TPM: 1335.0
Min TPM: 412.4
MONOCYTES_1
1335.0
MONOCYTES_2
1256.6
MONOCYTES_3
1231.9
MONOCYTES_4
1171.8
MONOCYTES_5
1154.9
MONOCYTES_6
1141.2
MONOCYTES_7
1124.1
MONOCYTES_8
1113.6
MONOCYTES_9
1088.7
MONOCYTES_10
1066.9
MONOCYTES_11
1043.0
MONOCYTES_12
1040.7
MONOCYTES_13
1038.4
MONOCYTES_14
1037.4
MONOCYTES_15
1020.3
MONOCYTES_16
1010.3
MONOCYTES_17
1001.0
MONOCYTES_18
995.7
MONOCYTES_19
991.9
MONOCYTES_20
989.7
MONOCYTES_21
988.5
MONOCYTES_22
976.1
MONOCYTES_23
974.6
MONOCYTES_24
971.8
MONOCYTES_25
967.8
MONOCYTES_26
958.3
MONOCYTES_27
957.2
MONOCYTES_28
943.6
MONOCYTES_29
934.3
MONOCYTES_30
931.6
MONOCYTES_31
923.7
MONOCYTES_32
905.3
MONOCYTES_33
903.1
MONOCYTES_34
900.5
MONOCYTES_35
880.5
MONOCYTES_36
874.4
MONOCYTES_37
865.2
MONOCYTES_38
861.6
MONOCYTES_39
860.1
MONOCYTES_40
853.1
MONOCYTES_41
850.0
MONOCYTES_42
846.6
MONOCYTES_43
835.2
MONOCYTES_44
823.5
MONOCYTES_45
812.2
MONOCYTES_46
809.0
MONOCYTES_47
803.1
MONOCYTES_48
798.9
MONOCYTES_49
796.6
MONOCYTES_50
794.7
MONOCYTES_51
793.3
MONOCYTES_52
784.8
MONOCYTES_53
775.1
MONOCYTES_54
767.9
MONOCYTES_55
763.9
MONOCYTES_56
755.5
MONOCYTES_57
751.9
MONOCYTES_58
747.6
MONOCYTES_59
745.1
MONOCYTES_60
728.9
MONOCYTES_61
722.5
MONOCYTES_62
721.6
MONOCYTES_63
719.8
MONOCYTES_64
719.4
MONOCYTES_65
713.2
MONOCYTES_66
709.1
MONOCYTES_67
704.9
MONOCYTES_68
700.4
MONOCYTES_69
697.1
MONOCYTES_70
690.9
MONOCYTES_71
687.4
MONOCYTES_72
677.2
MONOCYTES_73
673.8
MONOCYTES_74
671.7
MONOCYTES_75
666.7
MONOCYTES_76
665.7
MONOCYTES_77
641.2
MONOCYTES_78
623.2
MONOCYTES_79
613.4
MONOCYTES_80
595.1
MONOCYTES_81
569.3
MONOCYTES_82
567.6
MONOCYTES_83
556.0
MONOCYTES_84
551.3
MONOCYTES_85
533.9
MONOCYTES_86
531.4
MONOCYTES_87
512.4
MONOCYTES_88
485.9
MONOCYTES_89
481.9
MONOCYTES_90
465.6
MONOCYTES_91
412.4
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Non-classical monocyte TPM: 267.5
Samples: 90
Max TPM: 556.4
Min TPM: 148.3
M2_1
556.4
M2_2
532.8
M2_3
499.3
M2_4
488.4
M2_5
473.8
M2_6
419.4
M2_7
382.1
M2_8
370.1
M2_9
357.4
M2_10
352.4
M2_11
346.6
M2_12
343.5
M2_13
333.9
M2_14
332.1
M2_15
323.4
M2_16
321.6
M2_17
319.7
M2_18
318.5
M2_19
318.3
M2_20
317.0
M2_21
315.2
M2_22
314.1
M2_23
302.0
M2_24
300.8
M2_25
289.2
M2_26
287.3
M2_27
286.1
M2_28
286.1
M2_29
284.0
M2_30
281.1
M2_31
280.6
M2_32
280.2
M2_33
278.8
M2_34
278.0
M2_35
272.7
M2_36
272.4
M2_37
270.6
M2_38
268.6
M2_39
266.3
M2_40
263.6
M2_41
261.3
M2_42
260.6
M2_43
258.1
M2_44
257.9
M2_45
256.6
M2_46
255.1
M2_47
250.4
M2_48
250.3
M2_49
246.8
M2_50
244.5
M2_51
239.5
M2_52
237.9
M2_53
237.3
M2_54
236.2
M2_55
233.4
M2_56
232.3
M2_57
231.5
M2_58
230.1
M2_59
228.0
M2_60
227.1
M2_61
226.2
M2_62
225.0
M2_63
219.1
M2_64
217.9
M2_65
217.5
M2_66
214.8
M2_67
211.9
M2_68
211.7
M2_69
210.1
M2_70
208.2
M2_71
207.5
M2_72
206.2
M2_73
200.1
M2_74
199.6
M2_75
198.8
M2_76
196.7
M2_77
193.0
M2_78
192.2
M2_79
190.5
M2_80
184.7
M2_81
184.5
M2_82
183.5
M2_83
181.6
M2_84
173.9
M2_85
171.5
M2_86
167.3
M2_87
163.3
M2_88
160.0
M2_89
151.9
M2_90
148.3
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