A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.9
nTPM
Monaco:
511.6
nTPM
Schmiedel:
156.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
HPA sample
nTPM
Memory B-cell nTPM: 49.9
Samples: 6
Max nTPM: 62.0
Min nTPM: 41.9
P10809_1017
48.7
P10809_1025
45.1
P10809_1044
49.0
P10809_1063
52.6
P10809_1092
62.0
P10809_1105
41.9
Naive B-cell nTPM: 43.7
Samples: 6
Max nTPM: 58.9
Min nTPM: 36.0
P10809_1011
36.9
P10809_1029
37.9
P10809_1048
36.0
P10809_1067
42.2
P10809_1091
50.2
P10809_1104
58.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
511.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 219.2
Samples: 4
Max nTPM: 253.2
Min nTPM: 189.3
RHH5310_R3677
205.0
RHH5218_R3590
189.3
RHH5247_R3619
253.2
RHH5276_R3648
229.4
Naive B-cell nTPM: 202.3
Samples: 4
Max nTPM: 234.0
Min nTPM: 174.3
RHH5308_R3675
174.3
RHH5216_R3588
222.1
RHH5245_R3617
178.8
RHH5274_R3646
234.0
Non-switched memory B-cell nTPM: 214.5
Samples: 4
Max nTPM: 241.4
Min nTPM: 187.7
RHH5309_R3676
209.9
RHH5217_R3589
187.7
RHH5246_R3618
241.4
RHH5275_R3647
219.1
Plasmablast nTPM: 511.6
Samples: 4
Max nTPM: 569.2
Min nTPM: 473.5
RHH5312_R3679
480.5
RHH5220_R3592
523.2
RHH5249_R3621
569.2
RHH5278_R3650
473.5
Switched memory B-cell nTPM: 174.8
Samples: 4
Max nTPM: 205.0
Min nTPM: 142.3
RHH5311_R3678
142.3
RHH5219_R3591
205.0
RHH5248_R3620
161.1
RHH5277_R3649
190.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.5
Schmiedel sample id
TPM
Naive B-cell TPM: 156.5
Samples: 91
Max TPM: 252.0
Min TPM: 60.9
B_CELL_NAIVE_1
252.0
B_CELL_NAIVE_2
243.2
B_CELL_NAIVE_3
242.7
B_CELL_NAIVE_4
231.9
B_CELL_NAIVE_5
231.5
B_CELL_NAIVE_6
228.6
B_CELL_NAIVE_7
209.8
B_CELL_NAIVE_8
203.2
B_CELL_NAIVE_9
200.8
B_CELL_NAIVE_10
193.9
B_CELL_NAIVE_11
193.0
B_CELL_NAIVE_12
192.8
B_CELL_NAIVE_13
186.7
B_CELL_NAIVE_14
185.9
B_CELL_NAIVE_15
179.8
B_CELL_NAIVE_16
177.6
B_CELL_NAIVE_17
176.0
B_CELL_NAIVE_18
176.0
B_CELL_NAIVE_19
174.3
B_CELL_NAIVE_20
172.5
B_CELL_NAIVE_21
171.5
B_CELL_NAIVE_22
168.9
B_CELL_NAIVE_23
168.0
B_CELL_NAIVE_24
167.7
B_CELL_NAIVE_25
166.5
B_CELL_NAIVE_26
166.3
B_CELL_NAIVE_27
165.4
B_CELL_NAIVE_28
165.0
B_CELL_NAIVE_29
164.9
B_CELL_NAIVE_30
164.4
B_CELL_NAIVE_31
163.0
B_CELL_NAIVE_32
163.0
B_CELL_NAIVE_33
162.9
B_CELL_NAIVE_34
162.9
B_CELL_NAIVE_35
162.9
B_CELL_NAIVE_36
162.0
B_CELL_NAIVE_37
159.5
B_CELL_NAIVE_38
159.4
B_CELL_NAIVE_39
158.6
B_CELL_NAIVE_40
156.9
B_CELL_NAIVE_41
156.2
B_CELL_NAIVE_42
155.6
B_CELL_NAIVE_43
154.3
B_CELL_NAIVE_44
154.3
B_CELL_NAIVE_45
154.0
B_CELL_NAIVE_46
152.8
B_CELL_NAIVE_47
152.7
B_CELL_NAIVE_48
152.4
B_CELL_NAIVE_49
151.3
B_CELL_NAIVE_50
151.1
B_CELL_NAIVE_51
150.8
B_CELL_NAIVE_52
149.6
B_CELL_NAIVE_53
149.3
B_CELL_NAIVE_54
148.9
B_CELL_NAIVE_55
146.0
B_CELL_NAIVE_56
145.5
B_CELL_NAIVE_57
144.0
B_CELL_NAIVE_58
143.9
B_CELL_NAIVE_59
143.4
B_CELL_NAIVE_60
141.4
B_CELL_NAIVE_61
141.4
B_CELL_NAIVE_62
140.6
B_CELL_NAIVE_63
139.6
B_CELL_NAIVE_64
138.4
B_CELL_NAIVE_65
137.7
B_CELL_NAIVE_66
136.5
B_CELL_NAIVE_67
136.1
B_CELL_NAIVE_68
135.7
B_CELL_NAIVE_69
135.7
B_CELL_NAIVE_70
134.8
B_CELL_NAIVE_71
134.7
B_CELL_NAIVE_72
131.9
B_CELL_NAIVE_73
131.4
B_CELL_NAIVE_74
131.1
B_CELL_NAIVE_75
130.3
B_CELL_NAIVE_76
130.3
B_CELL_NAIVE_77
130.3
B_CELL_NAIVE_78
128.4
B_CELL_NAIVE_79
128.3
B_CELL_NAIVE_80
127.0
B_CELL_NAIVE_81
126.9
B_CELL_NAIVE_82
126.8
B_CELL_NAIVE_83
126.5
B_CELL_NAIVE_84
124.8
B_CELL_NAIVE_85
123.5
B_CELL_NAIVE_86
123.2
B_CELL_NAIVE_87
119.2
B_CELL_NAIVE_88
118.2
B_CELL_NAIVE_89
90.7
B_CELL_NAIVE_90
87.0
B_CELL_NAIVE_91
60.9
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