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BETA
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  • TPD52
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:49.9 nTPM
Monaco:511.6 nTPM
Schmiedel:156.5 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

49.9
HPA sample nTPM
Memory B-cell
nTPM: 49.9
Samples: 6

Max nTPM: 62.0
Min nTPM: 41.9
P10809_1017 48.7
P10809_1025 45.1
P10809_1044 49.0
P10809_1063 52.6
P10809_1092 62.0
P10809_1105 41.9
Naive B-cell
nTPM: 43.7
Samples: 6

Max nTPM: 58.9
Min nTPM: 36.0
P10809_1011 36.9
P10809_1029 37.9
P10809_1048 36.0
P10809_1067 42.2
P10809_1091 50.2
P10809_1104 58.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

511.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 219.2
Samples: 4

Max nTPM: 253.2
Min nTPM: 189.3
RHH5310_R3677 205.0
RHH5218_R3590 189.3
RHH5247_R3619 253.2
RHH5276_R3648 229.4
Naive B-cell
nTPM: 202.3
Samples: 4

Max nTPM: 234.0
Min nTPM: 174.3
RHH5308_R3675 174.3
RHH5216_R3588 222.1
RHH5245_R3617 178.8
RHH5274_R3646 234.0
Non-switched memory B-cell
nTPM: 214.5
Samples: 4

Max nTPM: 241.4
Min nTPM: 187.7
RHH5309_R3676 209.9
RHH5217_R3589 187.7
RHH5246_R3618 241.4
RHH5275_R3647 219.1
Plasmablast
nTPM: 511.6
Samples: 4

Max nTPM: 569.2
Min nTPM: 473.5
RHH5312_R3679 480.5
RHH5220_R3592 523.2
RHH5249_R3621 569.2
RHH5278_R3650 473.5
Switched memory B-cell
nTPM: 174.8
Samples: 4

Max nTPM: 205.0
Min nTPM: 142.3
RHH5311_R3678 142.3
RHH5219_R3591 205.0
RHH5248_R3620 161.1
RHH5277_R3649 190.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

156.5
Schmiedel sample id TPM
Naive B-cell
TPM: 156.5
Samples: 91

Max TPM: 252.0
Min TPM: 60.9
B_CELL_NAIVE_1 252.0
B_CELL_NAIVE_2 243.2
B_CELL_NAIVE_3 242.7
B_CELL_NAIVE_4 231.9
B_CELL_NAIVE_5 231.5
B_CELL_NAIVE_6 228.6
B_CELL_NAIVE_7 209.8
B_CELL_NAIVE_8 203.2
B_CELL_NAIVE_9 200.8
B_CELL_NAIVE_10 193.9
B_CELL_NAIVE_11 193.0
B_CELL_NAIVE_12 192.8
B_CELL_NAIVE_13 186.7
B_CELL_NAIVE_14 185.9
B_CELL_NAIVE_15 179.8
B_CELL_NAIVE_16 177.6
B_CELL_NAIVE_17 176.0
B_CELL_NAIVE_18 176.0
B_CELL_NAIVE_19 174.3
B_CELL_NAIVE_20 172.5
B_CELL_NAIVE_21 171.5
B_CELL_NAIVE_22 168.9
B_CELL_NAIVE_23 168.0
B_CELL_NAIVE_24 167.7
B_CELL_NAIVE_25 166.5
B_CELL_NAIVE_26 166.3
B_CELL_NAIVE_27 165.4
B_CELL_NAIVE_28 165.0
B_CELL_NAIVE_29 164.9
B_CELL_NAIVE_30 164.4
B_CELL_NAIVE_31 163.0
B_CELL_NAIVE_32 163.0
B_CELL_NAIVE_33 162.9
B_CELL_NAIVE_34 162.9
B_CELL_NAIVE_35 162.9
B_CELL_NAIVE_36 162.0
B_CELL_NAIVE_37 159.5
B_CELL_NAIVE_38 159.4
B_CELL_NAIVE_39 158.6
B_CELL_NAIVE_40 156.9
B_CELL_NAIVE_41 156.2
B_CELL_NAIVE_42 155.6
B_CELL_NAIVE_43 154.3
B_CELL_NAIVE_44 154.3
B_CELL_NAIVE_45 154.0
B_CELL_NAIVE_46 152.8
B_CELL_NAIVE_47 152.7
B_CELL_NAIVE_48 152.4
B_CELL_NAIVE_49 151.3
B_CELL_NAIVE_50 151.1
B_CELL_NAIVE_51 150.8
B_CELL_NAIVE_52 149.6
B_CELL_NAIVE_53 149.3
B_CELL_NAIVE_54 148.9
B_CELL_NAIVE_55 146.0
B_CELL_NAIVE_56 145.5
B_CELL_NAIVE_57 144.0
B_CELL_NAIVE_58 143.9
B_CELL_NAIVE_59 143.4
B_CELL_NAIVE_60 141.4
B_CELL_NAIVE_61 141.4
B_CELL_NAIVE_62 140.6
B_CELL_NAIVE_63 139.6
B_CELL_NAIVE_64 138.4
B_CELL_NAIVE_65 137.7
B_CELL_NAIVE_66 136.5
B_CELL_NAIVE_67 136.1
B_CELL_NAIVE_68 135.7
B_CELL_NAIVE_69 135.7
B_CELL_NAIVE_70 134.8
B_CELL_NAIVE_71 134.7
B_CELL_NAIVE_72 131.9
B_CELL_NAIVE_73 131.4
B_CELL_NAIVE_74 131.1
B_CELL_NAIVE_75 130.3
B_CELL_NAIVE_76 130.3
B_CELL_NAIVE_77 130.3
B_CELL_NAIVE_78 128.4
B_CELL_NAIVE_79 128.3
B_CELL_NAIVE_80 127.0
B_CELL_NAIVE_81 126.9
B_CELL_NAIVE_82 126.8
B_CELL_NAIVE_83 126.5
B_CELL_NAIVE_84 124.8
B_CELL_NAIVE_85 123.5
B_CELL_NAIVE_86 123.2
B_CELL_NAIVE_87 119.2
B_CELL_NAIVE_88 118.2
B_CELL_NAIVE_89 90.7
B_CELL_NAIVE_90 87.0
B_CELL_NAIVE_91 60.9
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