A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.0
nTPM
Monaco:
49.9
nTPM
Schmiedel:
16.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.0
HPA sample
nTPM
NK-cell nTPM: 15.0
Samples: 6
Max nTPM: 18.1
Min nTPM: 9.2
P10809_1013
16.4
P10809_1033
13.0
P10809_1052
9.2
P10809_1071
18.1
P10809_1093
15.5
P10809_1103
17.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
Monaco sample
nTPM
NK-cell nTPM: 49.9
Samples: 4
Max nTPM: 59.1
Min nTPM: 40.3
RHH5316_R3683
52.1
RHH5224_R3596
48.2
RHH5253_R3625
40.3
RHH5282_R3654
59.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.6
Schmiedel sample id
TPM
NK-cell TPM: 16.6
Samples: 90
Max TPM: 47.6
Min TPM: 3.5
NK_1
47.6
NK_2
39.8
NK_3
33.9
NK_4
33.6
NK_5
30.2
NK_6
30.1
NK_7
28.2
NK_8
27.1
NK_9
26.8
NK_10
26.6
NK_11
26.0
NK_12
25.8
NK_13
25.6
NK_14
22.8
NK_15
22.2
NK_16
21.7
NK_17
21.1
NK_18
21.1
NK_19
20.8
NK_20
20.7
NK_21
20.5
NK_22
20.4
NK_23
20.4
NK_24
20.0
NK_25
19.8
NK_26
19.8
NK_27
19.2
NK_28
18.7
NK_29
18.2
NK_30
18.0
NK_31
17.8
NK_32
17.6
NK_33
17.3
NK_34
17.2
NK_35
17.1
NK_36
17.1
NK_37
16.7
NK_38
16.6
NK_39
16.5
NK_40
16.3
NK_41
16.2
NK_42
16.2
NK_43
16.2
NK_44
16.2
NK_45
15.9
NK_46
15.7
NK_47
15.2
NK_48
15.1
NK_49
14.9
NK_50
14.8
NK_51
14.7
NK_52
14.6
NK_53
14.6
NK_54
14.3
NK_55
14.2
NK_56
13.8
NK_57
13.7
NK_58
13.4
NK_59
13.3
NK_60
13.1
NK_61
13.1
NK_62
13.0
NK_63
13.0
NK_64
12.8
NK_65
12.4
NK_66
12.3
NK_67
12.3
NK_68
11.9
NK_69
11.5
NK_70
11.2
NK_71
10.8
NK_72
10.7
NK_73
10.3
NK_74
10.2
NK_75
10.0
NK_76
9.4
NK_77
9.3
NK_78
9.0
NK_79
8.9
NK_80
8.5
NK_81
8.4
NK_82
7.7
NK_83
7.2
NK_84
7.2
NK_85
6.7
NK_86
6.5
NK_87
6.1
NK_88
5.7
NK_89
4.5
NK_90
3.5
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