A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.5
nTPM
Monaco:
50.8
nTPM
Schmiedel:
56.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.5
HPA sample
nTPM
NK-cell nTPM: 14.5
Samples: 6
Max nTPM: 19.7
Min nTPM: 11.0
P10809_1013
19.7
P10809_1033
12.7
P10809_1052
13.7
P10809_1071
17.0
P10809_1093
12.8
P10809_1103
11.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.8
Monaco sample
nTPM
NK-cell nTPM: 50.8
Samples: 4
Max nTPM: 55.7
Min nTPM: 46.3
RHH5316_R3683
50.7
RHH5224_R3596
46.3
RHH5253_R3625
55.7
RHH5282_R3654
50.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.0
Schmiedel sample id
TPM
NK-cell TPM: 56.0
Samples: 90
Max TPM: 77.4
Min TPM: 32.2
NK_1
77.4
NK_2
74.3
NK_3
72.7
NK_4
72.4
NK_5
70.3
NK_6
69.0
NK_7
68.7
NK_8
68.0
NK_9
67.7
NK_10
67.7
NK_11
67.1
NK_12
66.1
NK_13
65.7
NK_14
65.1
NK_15
64.9
NK_16
64.8
NK_17
63.7
NK_18
63.2
NK_19
63.1
NK_20
62.0
NK_21
61.5
NK_22
61.2
NK_23
60.1
NK_24
59.8
NK_25
59.6
NK_26
59.4
NK_27
59.2
NK_28
59.1
NK_29
59.1
NK_30
57.8
NK_31
57.3
NK_32
57.2
NK_33
56.8
NK_34
56.4
NK_35
56.4
NK_36
56.4
NK_37
56.3
NK_38
56.1
NK_39
56.1
NK_40
56.1
NK_41
56.0
NK_42
56.0
NK_43
55.8
NK_44
55.7
NK_45
55.6
NK_46
55.6
NK_47
55.1
NK_48
54.8
NK_49
54.8
NK_50
54.6
NK_51
54.5
NK_52
54.5
NK_53
54.2
NK_54
54.2
NK_55
54.1
NK_56
53.9
NK_57
53.9
NK_58
53.8
NK_59
53.1
NK_60
53.0
NK_61
52.8
NK_62
52.6
NK_63
52.6
NK_64
52.0
NK_65
52.0
NK_66
51.6
NK_67
51.2
NK_68
50.7
NK_69
50.5
NK_70
50.4
NK_71
50.3
NK_72
50.2
NK_73
49.7
NK_74
49.3
NK_75
49.0
NK_76
48.5
NK_77
48.2
NK_78
48.2
NK_79
47.8
NK_80
47.8
NK_81
47.7
NK_82
46.9
NK_83
46.2
NK_84
45.7
NK_85
44.9
NK_86
43.7
NK_87
41.5
NK_88
40.8
NK_89
39.5
NK_90
32.2
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