A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.1
nTPM
Monaco:
100.7
nTPM
Schmiedel:
77.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
HPA sample
nTPM
Classical monocyte nTPM: 16.6
Samples: 6
Max nTPM: 21.9
Min nTPM: 11.6
P10809_1003
21.9
P10809_1020
18.8
P10809_1039
15.7
P10809_1058
12.2
P10809_1080
19.5
P10809_1107
11.6
Intermediate monocyte nTPM: 18.8
Samples: 6
Max nTPM: 29.5
Min nTPM: 13.0
P10809_1004
25.3
P10809_1023
29.5
P10809_1042
17.1
P10809_1061
14.3
P10809_1081
13.4
P10809_1108
13.0
Non-classical monocyte nTPM: 23.1
Samples: 5
Max nTPM: 42.9
Min nTPM: 10.4
P10809_1005
24.8
P10809_1053
23.9
P10809_1072
42.9
P10809_1082
10.4
P10809_1109
13.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.7
Monaco sample
nTPM
Classical monocyte nTPM: 100.7
Samples: 4
Max nTPM: 130.4
Min nTPM: 68.8
RHH5313_R3680
102.3
RHH5221_R3593
130.4
RHH5250_R3622
101.2
RHH5279_R3651
68.8
Intermediate monocyte nTPM: 98.1
Samples: 4
Max nTPM: 157.0
Min nTPM: 65.1
RHH5314_R3681
65.1
RHH5222_R3594
157.0
RHH5251_R3623
65.8
RHH5280_R3652
104.7
Non-classical monocyte nTPM: 91.6
Samples: 4
Max nTPM: 141.3
Min nTPM: 68.2
RHH5315_R3682
68.2
RHH5223_R3595
141.3
RHH5252_R3624
86.9
RHH5281_R3653
70.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.4
Schmiedel sample id
TPM
Classical monocyte TPM: 48.3
Samples: 91
Max TPM: 66.5
Min TPM: 35.7
MONOCYTES_1
66.5
MONOCYTES_2
63.7
MONOCYTES_3
63.0
MONOCYTES_4
62.3
MONOCYTES_5
62.0
MONOCYTES_6
61.9
MONOCYTES_7
61.0
MONOCYTES_8
60.6
MONOCYTES_9
60.0
MONOCYTES_10
59.3
MONOCYTES_11
59.0
MONOCYTES_12
58.6
MONOCYTES_13
58.4
MONOCYTES_14
57.6
MONOCYTES_15
57.2
MONOCYTES_16
57.0
MONOCYTES_17
56.4
MONOCYTES_18
55.8
MONOCYTES_19
55.4
MONOCYTES_20
55.1
MONOCYTES_21
55.1
MONOCYTES_22
54.3
MONOCYTES_23
53.7
MONOCYTES_24
53.4
MONOCYTES_25
53.2
MONOCYTES_26
52.8
MONOCYTES_27
52.6
MONOCYTES_28
51.5
MONOCYTES_29
50.7
MONOCYTES_30
50.6
MONOCYTES_31
50.2
MONOCYTES_32
50.0
MONOCYTES_33
50.0
MONOCYTES_34
49.9
MONOCYTES_35
49.9
MONOCYTES_36
49.7
MONOCYTES_37
49.5
MONOCYTES_38
49.4
MONOCYTES_39
48.9
MONOCYTES_40
48.4
MONOCYTES_41
48.2
MONOCYTES_42
48.1
MONOCYTES_43
47.9
MONOCYTES_44
47.6
MONOCYTES_45
47.4
MONOCYTES_46
47.2
MONOCYTES_47
46.9
MONOCYTES_48
46.9
MONOCYTES_49
46.9
MONOCYTES_50
46.8
MONOCYTES_51
45.8
MONOCYTES_52
45.8
MONOCYTES_53
45.3
MONOCYTES_54
44.7
MONOCYTES_55
44.6
MONOCYTES_56
44.5
MONOCYTES_57
44.5
MONOCYTES_58
44.4
MONOCYTES_59
44.4
MONOCYTES_60
44.4
MONOCYTES_61
44.2
MONOCYTES_62
44.2
MONOCYTES_63
44.1
MONOCYTES_64
44.1
MONOCYTES_65
43.9
MONOCYTES_66
43.5
MONOCYTES_67
43.4
MONOCYTES_68
42.8
MONOCYTES_69
42.7
MONOCYTES_70
42.7
MONOCYTES_71
41.8
MONOCYTES_72
41.6
MONOCYTES_73
41.5
MONOCYTES_74
41.5
MONOCYTES_75
41.5
MONOCYTES_76
41.4
MONOCYTES_77
41.1
MONOCYTES_78
41.0
MONOCYTES_79
40.1
MONOCYTES_80
39.5
MONOCYTES_81
39.4
MONOCYTES_82
39.0
MONOCYTES_83
38.6
MONOCYTES_84
38.5
MONOCYTES_85
38.4
MONOCYTES_86
37.9
MONOCYTES_87
36.5
MONOCYTES_88
36.4
MONOCYTES_89
36.4
MONOCYTES_90
35.7
MONOCYTES_91
35.7
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Non-classical monocyte TPM: 77.4
Samples: 90
Max TPM: 109.2
Min TPM: 54.3
M2_1
109.2
M2_2
103.7
M2_3
103.0
M2_4
102.6
M2_5
99.9
M2_6
98.4
M2_7
93.0
M2_8
92.4
M2_9
91.2
M2_10
90.8
M2_11
90.1
M2_12
89.9
M2_13
88.5
M2_14
87.9
M2_15
87.8
M2_16
87.7
M2_17
86.8
M2_18
86.6
M2_19
86.6
M2_20
84.8
M2_21
84.8
M2_22
83.6
M2_23
83.3
M2_24
82.6
M2_25
82.1
M2_26
81.8
M2_27
81.8
M2_28
81.5
M2_29
81.3
M2_30
80.5
M2_31
80.3
M2_32
79.0
M2_33
78.8
M2_34
78.6
M2_35
78.5
M2_36
78.1
M2_37
77.9
M2_38
77.4
M2_39
77.2
M2_40
77.1
M2_41
77.0
M2_42
76.5
M2_43
76.4
M2_44
76.1
M2_45
75.8
M2_46
75.8
M2_47
75.7
M2_48
75.4
M2_49
75.3
M2_50
75.2
M2_51
75.1
M2_52
74.4
M2_53
74.4
M2_54
74.1
M2_55
74.0
M2_56
73.9
M2_57
73.8
M2_58
73.6
M2_59
73.5
M2_60
72.9
M2_61
72.9
M2_62
72.4
M2_63
72.2
M2_64
71.5
M2_65
71.5
M2_66
70.9
M2_67
69.6
M2_68
69.6
M2_69
69.5
M2_70
69.4
M2_71
69.0
M2_72
68.8
M2_73
68.5
M2_74
68.1
M2_75
68.1
M2_76
67.4
M2_77
67.4
M2_78
67.2
M2_79
66.4
M2_80
66.0
M2_81
65.1
M2_82
64.8
M2_83
64.1
M2_84
62.4
M2_85
62.3
M2_86
61.9
M2_87
61.0
M2_88
60.7
M2_89
56.4
M2_90
54.3
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