MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:50.6 nTPM
GTEx:14.2 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:20.7 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
1870 Female, age 42, unknown 49.6
1827 Male, age 72, unknown 48.4
2586 Male, age 75, left hemisphere 47.9
2828 Female, age 72, unknown 45.4
1833 Male, age 53, unknown 44.7
2411 Female, age 72, unknown 44.1
2219 Male, age 76, both hemispheres 42.1
1830 Male, age 51, unknown 41.8
2019 Male, age 18, unknown 41.0
2666 Male, age 74, left hemisphere 39.5
Dorsal raphe nucleus
nTPM: 45.6
2016 Female, age 72, unknown 51.5
2298 Female, age 72, unknown 51.2
1828 Male, age 53, unknown 45.0
2047 Male, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 39.6
Inferior colliculus
nTPM: 50.6
2097 Female, age 72, unknown 56.8
1890 Male, age 53, unknown 49.4
2849 Male, age 72, unknown 48.2
1848 Female, age 42, unknown 47.8
Median raphe nucleus
nTPM: 40.4
2220 Male, age 76, midline 40.4
Periaquaductal grey, anterior
nTPM: 47.6
1947 Male, age 18, unknown 52.3
2502 Female, age 75, unknown 47.1
1795 Male, age 51, unknown 43.3
Periaquaductal grey, dorsal
nTPM: 49.5
2850 Male, age 76, both hemispheres 52.9
1840 Male, age 53, unknown 52.8
1831 Male, age 72, unknown 49.2
2464 Female, age 72, unknown 43.0
Periaquaductal grey, lateral
nTPM: 43.8
2140 Male, age 76, both hemispheres 48.3
2053 Male, age 18, unknown 44.5
2272 Male, age 74, both hemispheres 38.5
Pretectal area
nTPM: 46.2
1816 Male, age 51, unknown 51.0
2273 Male, age 74, both hemispheres 49.7
1815 Male, age 53, unknown 48.7
1817 Female, age 42, unknown 47.6
2007 Male, age 72, unknown 46.6
2825 Male, age 18, unknown 46.6
2224 Female, age 72, unknown 46.4
1944 Female, age 72, unknown 46.2
2667 Female, age 75, unknown 43.9
2316 Male, age 76, right hemisphere 42.8
2407 Male, age 75, both hemispheres 38.6
Red nucleus
nTPM: 45.4
1821 Female, age 72, unknown 55.6
2503 Female, age 72, unknown 52.6
1954 Female, age 42, unknown 48.3
1865 Male, age 51, unknown 46.3
1904 Male, age 53, unknown 45.7
2227 Male, age 72, unknown 45.3
2769 Male, age 72, unknown 45.0
2725 Female, age 75, unknown 44.7
2588 Male, age 74, left hemisphere 42.2
2823 Male, age 76, right hemisphere 40.8
2785 Male, age 18, unknown 40.7
2584 Male, age 75, left hemisphere 37.9
Substantia nigra
nTPM: 43.3
1889 Female, age 72, unknown 47.2
2241 Male, age 72, unknown 46.4
2590 Female, age 75, unknown 45.3
2665 Male, age 74, both hemispheres 45.0
1916 Female, age 42, unknown 44.1
2699 Male, age 18, unknown 44.0
2583 Male, age 75, right hemisphere 42.4
1851 Male, age 51, unknown 41.8
1941 Male, age 53, unknown 38.8
2409 Female, age 72, unknown 38.5
Superior colliculus
nTPM: 45.9
2587 Male, age 74, left hemisphere 50.3
2261 Male, age 18, unknown 47.6
1913 Female, age 42, unknown 47.1
2668 Female, age 75, unknown 46.7
1839 Male, age 51, unknown 45.9
1995 Male, age 72, unknown 45.2
1895 Male, age 76, right hemisphere 45.0
1796 Male, age 53, unknown 44.7
2664 Male, age 75, both hemispheres 44.4
2087 Female, age 72, unknown 41.8
Ventral tegmental area
nTPM: 43.0
1942 Male, age 51, unknown 45.5
1915 Female, age 42, unknown 44.1
2021 Male, age 53, unknown 43.7
2410 Female, age 72, unknown 43.1
2218 Male, age 76, both hemispheres 41.3
2223 Female, age 72, unknown 40.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 183

Max nTPM: 26.7
Min nTPM: 2.8
Std nTPM: 4.1
Median nTPM: 14.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 24.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 22.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 22.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 22.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 21.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 21.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 21.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 20.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 40.4
Min nTPM: 36.6
Sample A Female 39.7
Sample B Female 36.6
Sample C Male 39.4
Sample D Male 40.4
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 46.3
Min nTPM: 41.1
Sample A Female 46.2
Sample B Female 41.1
Sample C Male 46.3
Sample D Male 42.5
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 37.1
Min nTPM: 34.7
Sample B Female 37.0
Sample C Male 37.1
Sample D Male 34.7
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 41.8
Min nTPM: 39.2
Sample A Female 40.2
Sample B Female 39.2
Sample C Male 41.8
Sample D Male 40.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 22.5
Sample C Female 20.9
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
100146153 Antisense, RP_110421_02_D12, Mouse strain C57BL/6J (56 days, male) 1.8

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