A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
21.4
nTPM
Schmiedel:
221.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
NK-cell nTPM: 3.0
Samples: 6
Max nTPM: 9.0
Min nTPM: 0.1
P10809_1013
3.1
P10809_1033
2.3
P10809_1052
0.7
P10809_1071
0.1
P10809_1093
9.0
P10809_1103
2.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.4
Monaco sample
nTPM
NK-cell nTPM: 21.4
Samples: 4
Max nTPM: 32.8
Min nTPM: 13.7
RHH5316_R3683
23.6
RHH5224_R3596
13.7
RHH5253_R3625
32.8
RHH5282_R3654
15.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
221.4
Schmiedel sample id
TPM
NK-cell TPM: 221.4
Samples: 90
Max TPM: 363.7
Min TPM: 149.5
NK_1
363.7
NK_2
323.3
NK_3
321.5
NK_4
310.2
NK_5
304.0
NK_6
300.8
NK_7
293.5
NK_8
277.4
NK_9
276.6
NK_10
273.2
NK_11
267.4
NK_12
264.9
NK_13
263.0
NK_14
261.3
NK_15
258.4
NK_16
255.0
NK_17
252.8
NK_18
252.0
NK_19
250.3
NK_20
248.8
NK_21
242.4
NK_22
241.0
NK_23
240.4
NK_24
237.5
NK_25
235.8
NK_26
233.3
NK_27
233.3
NK_28
233.1
NK_29
232.3
NK_30
231.3
NK_31
231.1
NK_32
228.7
NK_33
227.1
NK_34
226.9
NK_35
226.2
NK_36
225.0
NK_37
224.2
NK_38
224.2
NK_39
223.2
NK_40
222.7
NK_41
219.2
NK_42
215.8
NK_43
215.0
NK_44
214.9
NK_45
214.4
NK_46
212.0
NK_47
211.5
NK_48
211.2
NK_49
210.5
NK_50
207.1
NK_51
206.1
NK_52
206.0
NK_53
204.5
NK_54
204.4
NK_55
203.4
NK_56
203.1
NK_57
202.3
NK_58
202.2
NK_59
202.1
NK_60
200.3
NK_61
199.5
NK_62
197.9
NK_63
197.8
NK_64
197.7
NK_65
197.5
NK_66
197.3
NK_67
197.2
NK_68
196.2
NK_69
195.8
NK_70
192.5
NK_71
192.1
NK_72
190.3
NK_73
190.3
NK_74
187.9
NK_75
187.6
NK_76
187.5
NK_77
187.0
NK_78
184.8
NK_79
183.3
NK_80
179.3
NK_81
178.2
NK_82
177.4
NK_83
176.8
NK_84
175.4
NK_85
168.6
NK_86
167.6
NK_87
162.7
NK_88
162.3
NK_89
162.1
NK_90
149.5
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