A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
14.1
nTPM
Schmiedel:
135.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.5
P10809_1003
0.7
P10809_1020
0.9
P10809_1039
1.2
P10809_1058
1.1
P10809_1080
0.6
P10809_1107
0.5
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1004
1.2
P10809_1023
0.8
P10809_1042
1.9
P10809_1061
1.7
P10809_1081
1.0
P10809_1108
0.5
Non-classical monocyte nTPM: 0.9
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1005
1.4
P10809_1053
1.2
P10809_1072
0.0
P10809_1082
1.0
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Monaco sample
nTPM
Classical monocyte nTPM: 12.2
Samples: 4
Max nTPM: 20.7
Min nTPM: 7.5
RHH5313_R3680
7.9
RHH5221_R3593
20.7
RHH5250_R3622
7.5
RHH5279_R3651
12.6
Intermediate monocyte nTPM: 14.1
Samples: 4
Max nTPM: 19.5
Min nTPM: 8.6
RHH5314_R3681
17.7
RHH5222_R3594
10.5
RHH5251_R3623
19.5
RHH5280_R3652
8.6
Non-classical monocyte nTPM: 13.4
Samples: 4
Max nTPM: 24.0
Min nTPM: 5.3
RHH5315_R3682
15.5
RHH5223_R3595
8.8
RHH5252_R3624
24.0
RHH5281_R3653
5.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.0
Schmiedel sample id
TPM
Classical monocyte TPM: 92.8
Samples: 91
Max TPM: 132.3
Min TPM: 64.2
MONOCYTES_1
132.3
MONOCYTES_2
122.7
MONOCYTES_3
122.3
MONOCYTES_4
122.2
MONOCYTES_5
120.6
MONOCYTES_6
117.5
MONOCYTES_7
116.9
MONOCYTES_8
116.0
MONOCYTES_9
115.3
MONOCYTES_10
113.6
MONOCYTES_11
113.6
MONOCYTES_12
110.0
MONOCYTES_13
108.2
MONOCYTES_14
105.9
MONOCYTES_15
105.8
MONOCYTES_16
105.5
MONOCYTES_17
105.3
MONOCYTES_18
104.7
MONOCYTES_19
104.4
MONOCYTES_20
104.2
MONOCYTES_21
104.1
MONOCYTES_22
103.9
MONOCYTES_23
102.3
MONOCYTES_24
102.2
MONOCYTES_25
101.7
MONOCYTES_26
100.6
MONOCYTES_27
100.2
MONOCYTES_28
99.4
MONOCYTES_29
99.2
MONOCYTES_30
99.1
MONOCYTES_31
98.7
MONOCYTES_32
98.0
MONOCYTES_33
97.5
MONOCYTES_34
97.3
MONOCYTES_35
97.1
MONOCYTES_36
95.4
MONOCYTES_37
95.2
MONOCYTES_38
95.1
MONOCYTES_39
94.8
MONOCYTES_40
94.5
MONOCYTES_41
91.9
MONOCYTES_42
91.9
MONOCYTES_43
91.5
MONOCYTES_44
91.2
MONOCYTES_45
91.0
MONOCYTES_46
90.2
MONOCYTES_47
89.7
MONOCYTES_48
89.5
MONOCYTES_49
89.2
MONOCYTES_50
89.2
MONOCYTES_51
89.1
MONOCYTES_52
88.7
MONOCYTES_53
88.7
MONOCYTES_54
88.4
MONOCYTES_55
88.0
MONOCYTES_56
87.7
MONOCYTES_57
87.6
MONOCYTES_58
87.3
MONOCYTES_59
87.3
MONOCYTES_60
86.8
MONOCYTES_61
86.7
MONOCYTES_62
85.7
MONOCYTES_63
85.4
MONOCYTES_64
85.4
MONOCYTES_65
85.2
MONOCYTES_66
83.7
MONOCYTES_67
83.4
MONOCYTES_68
83.0
MONOCYTES_69
81.3
MONOCYTES_70
80.7
MONOCYTES_71
80.0
MONOCYTES_72
79.8
MONOCYTES_73
79.8
MONOCYTES_74
79.3
MONOCYTES_75
79.2
MONOCYTES_76
78.6
MONOCYTES_77
78.3
MONOCYTES_78
78.2
MONOCYTES_79
77.9
MONOCYTES_80
77.8
MONOCYTES_81
77.1
MONOCYTES_82
75.2
MONOCYTES_83
74.9
MONOCYTES_84
74.4
MONOCYTES_85
74.0
MONOCYTES_86
73.3
MONOCYTES_87
71.1
MONOCYTES_88
70.1
MONOCYTES_89
68.9
MONOCYTES_90
68.4
MONOCYTES_91
64.2
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Non-classical monocyte TPM: 135.0
Samples: 90
Max TPM: 223.2
Min TPM: 91.6
M2_1
223.2
M2_2
216.8
M2_3
198.1
M2_4
194.7
M2_5
190.1
M2_6
189.9
M2_7
186.1
M2_8
185.5
M2_9
182.6
M2_10
177.7
M2_11
176.4
M2_12
174.0
M2_13
173.7
M2_14
170.8
M2_15
167.7
M2_16
167.3
M2_17
160.5
M2_18
158.1
M2_19
155.7
M2_20
155.3
M2_21
154.5
M2_22
152.4
M2_23
147.4
M2_24
141.5
M2_25
140.1
M2_26
140.1
M2_27
139.4
M2_28
138.7
M2_29
138.5
M2_30
138.3
M2_31
135.8
M2_32
135.7
M2_33
135.1
M2_34
134.4
M2_35
134.1
M2_36
134.0
M2_37
133.5
M2_38
132.2
M2_39
131.4
M2_40
130.8
M2_41
130.5
M2_42
129.3
M2_43
129.0
M2_44
127.4
M2_45
127.2
M2_46
126.1
M2_47
125.4
M2_48
125.3
M2_49
124.9
M2_50
124.0
M2_51
123.5
M2_52
123.1
M2_53
122.8
M2_54
122.8
M2_55
122.5
M2_56
122.3
M2_57
122.3
M2_58
121.1
M2_59
121.0
M2_60
120.9
M2_61
120.0
M2_62
119.6
M2_63
119.0
M2_64
118.7
M2_65
117.1
M2_66
117.0
M2_67
116.5
M2_68
115.8
M2_69
115.5
M2_70
115.4
M2_71
115.1
M2_72
114.2
M2_73
113.2
M2_74
112.9
M2_75
111.5
M2_76
110.7
M2_77
110.6
M2_78
110.2
M2_79
109.4
M2_80
109.0
M2_81
107.6
M2_82
106.2
M2_83
101.9
M2_84
101.4
M2_85
100.4
M2_86
100.2
M2_87
96.9
M2_88
94.3
M2_89
93.8
M2_90
91.6
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