A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
22.1
nTPM
Schmiedel:
85.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
NK-cell nTPM: 3.9
Samples: 6
Max nTPM: 7.0
Min nTPM: 0.0
P10809_1013
3.4
P10809_1033
3.6
P10809_1052
3.7
P10809_1071
5.8
P10809_1093
0.0
P10809_1103
7.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.1
Monaco sample
nTPM
NK-cell nTPM: 22.1
Samples: 4
Max nTPM: 29.2
Min nTPM: 18.3
RHH5316_R3683
21.5
RHH5224_R3596
19.3
RHH5253_R3625
29.2
RHH5282_R3654
18.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.2
Schmiedel sample id
TPM
NK-cell TPM: 85.2
Samples: 90
Max TPM: 178.0
Min TPM: 46.3
NK_1
178.0
NK_2
159.9
NK_3
144.9
NK_4
130.8
NK_5
124.8
NK_6
123.8
NK_7
123.0
NK_8
117.3
NK_9
115.6
NK_10
115.4
NK_11
112.4
NK_12
110.3
NK_13
105.9
NK_14
101.6
NK_15
99.0
NK_16
96.1
NK_17
96.0
NK_18
95.4
NK_19
95.3
NK_20
94.9
NK_21
94.7
NK_22
94.2
NK_23
94.1
NK_24
93.7
NK_25
93.6
NK_26
93.4
NK_27
92.4
NK_28
92.0
NK_29
91.6
NK_30
90.3
NK_31
90.3
NK_32
89.1
NK_33
88.8
NK_34
88.6
NK_35
88.0
NK_36
87.6
NK_37
86.7
NK_38
86.3
NK_39
85.5
NK_40
85.4
NK_41
85.2
NK_42
85.2
NK_43
83.6
NK_44
82.5
NK_45
82.3
NK_46
82.1
NK_47
82.0
NK_48
81.7
NK_49
81.5
NK_50
81.3
NK_51
79.2
NK_52
78.4
NK_53
78.1
NK_54
78.1
NK_55
76.7
NK_56
75.7
NK_57
75.0
NK_58
74.2
NK_59
73.4
NK_60
73.4
NK_61
72.9
NK_62
71.3
NK_63
70.4
NK_64
70.4
NK_65
70.1
NK_66
70.0
NK_67
69.5
NK_68
69.5
NK_69
69.4
NK_70
69.2
NK_71
69.1
NK_72
69.1
NK_73
68.1
NK_74
68.1
NK_75
67.9
NK_76
67.3
NK_77
66.3
NK_78
65.1
NK_79
64.6
NK_80
63.3
NK_81
62.7
NK_82
62.3
NK_83
60.7
NK_84
60.1
NK_85
59.8
NK_86
58.1
NK_87
54.2
NK_88
49.3
NK_89
48.7
NK_90
46.3
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