A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
20.1
nTPM
Schmiedel:
74.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 2.5
Min nTPM: 1.5
P10809_1003
1.5
P10809_1020
2.2
P10809_1039
2.5
P10809_1058
2.2
P10809_1080
2.0
P10809_1107
2.5
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.1
Min nTPM: 1.4
P10809_1004
2.7
P10809_1023
1.5
P10809_1042
2.4
P10809_1061
1.4
P10809_1081
2.5
P10809_1108
3.1
Non-classical monocyte nTPM: 2.4
Samples: 5
Max nTPM: 3.4
Min nTPM: 1.3
P10809_1005
1.9
P10809_1053
2.2
P10809_1072
1.3
P10809_1082
3.2
P10809_1109
3.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Monaco sample
nTPM
Classical monocyte nTPM: 20.1
Samples: 4
Max nTPM: 22.6
Min nTPM: 17.9
RHH5313_R3680
20.1
RHH5221_R3593
19.7
RHH5250_R3622
17.9
RHH5279_R3651
22.6
Intermediate monocyte nTPM: 19.6
Samples: 4
Max nTPM: 25.7
Min nTPM: 12.2
RHH5314_R3681
12.2
RHH5222_R3594
19.8
RHH5251_R3623
20.8
RHH5280_R3652
25.7
Non-classical monocyte nTPM: 16.4
Samples: 4
Max nTPM: 18.0
Min nTPM: 15.6
RHH5315_R3682
15.6
RHH5223_R3595
15.8
RHH5252_R3624
18.0
RHH5281_R3653
16.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.3
Schmiedel sample id
TPM
Classical monocyte TPM: 72.8
Samples: 91
Max TPM: 99.4
Min TPM: 50.6
MONOCYTES_1
99.4
MONOCYTES_2
94.8
MONOCYTES_3
93.2
MONOCYTES_4
90.2
MONOCYTES_5
90.1
MONOCYTES_6
88.1
MONOCYTES_7
88.1
MONOCYTES_8
87.7
MONOCYTES_9
87.3
MONOCYTES_10
87.3
MONOCYTES_11
85.7
MONOCYTES_12
85.4
MONOCYTES_13
84.2
MONOCYTES_14
83.8
MONOCYTES_15
83.4
MONOCYTES_16
83.3
MONOCYTES_17
83.2
MONOCYTES_18
83.0
MONOCYTES_19
81.8
MONOCYTES_20
81.6
MONOCYTES_21
80.6
MONOCYTES_22
80.4
MONOCYTES_23
80.3
MONOCYTES_24
79.2
MONOCYTES_25
79.2
MONOCYTES_26
78.3
MONOCYTES_27
78.3
MONOCYTES_28
78.1
MONOCYTES_29
77.9
MONOCYTES_30
77.8
MONOCYTES_31
77.6
MONOCYTES_32
76.9
MONOCYTES_33
76.2
MONOCYTES_34
75.4
MONOCYTES_35
74.0
MONOCYTES_36
73.9
MONOCYTES_37
73.8
MONOCYTES_38
73.6
MONOCYTES_39
73.5
MONOCYTES_40
73.4
MONOCYTES_41
73.3
MONOCYTES_42
73.3
MONOCYTES_43
73.2
MONOCYTES_44
73.2
MONOCYTES_45
72.7
MONOCYTES_46
72.3
MONOCYTES_47
72.2
MONOCYTES_48
71.9
MONOCYTES_49
71.7
MONOCYTES_50
71.6
MONOCYTES_51
71.5
MONOCYTES_52
71.5
MONOCYTES_53
71.2
MONOCYTES_54
69.7
MONOCYTES_55
69.4
MONOCYTES_56
69.3
MONOCYTES_57
68.6
MONOCYTES_58
68.3
MONOCYTES_59
68.3
MONOCYTES_60
67.8
MONOCYTES_61
67.3
MONOCYTES_62
67.2
MONOCYTES_63
67.1
MONOCYTES_64
66.7
MONOCYTES_65
66.5
MONOCYTES_66
66.3
MONOCYTES_67
65.8
MONOCYTES_68
65.6
MONOCYTES_69
65.4
MONOCYTES_70
65.3
MONOCYTES_71
65.3
MONOCYTES_72
65.1
MONOCYTES_73
65.1
MONOCYTES_74
64.8
MONOCYTES_75
64.2
MONOCYTES_76
64.1
MONOCYTES_77
63.2
MONOCYTES_78
63.0
MONOCYTES_79
62.1
MONOCYTES_80
61.8
MONOCYTES_81
60.7
MONOCYTES_82
60.0
MONOCYTES_83
59.1
MONOCYTES_84
58.3
MONOCYTES_85
58.2
MONOCYTES_86
57.6
MONOCYTES_87
56.5
MONOCYTES_88
56.1
MONOCYTES_89
55.0
MONOCYTES_90
51.1
MONOCYTES_91
50.6
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Non-classical monocyte TPM: 74.3
Samples: 90
Max TPM: 115.8
Min TPM: 38.6
M2_1
115.8
M2_2
115.3
M2_3
109.4
M2_4
106.0
M2_5
104.7
M2_6
103.2
M2_7
97.6
M2_8
96.4
M2_9
95.4
M2_10
93.2
M2_11
90.8
M2_12
90.5
M2_13
90.2
M2_14
89.7
M2_15
89.5
M2_16
88.5
M2_17
87.8
M2_18
86.9
M2_19
85.6
M2_20
83.9
M2_21
82.8
M2_22
81.9
M2_23
80.6
M2_24
79.4
M2_25
78.1
M2_26
78.1
M2_27
77.6
M2_28
77.6
M2_29
77.2
M2_30
77.1
M2_31
76.2
M2_32
76.0
M2_33
75.7
M2_34
75.3
M2_35
74.3
M2_36
74.2
M2_37
73.8
M2_38
73.8
M2_39
73.5
M2_40
72.7
M2_41
72.2
M2_42
72.2
M2_43
72.2
M2_44
71.7
M2_45
71.5
M2_46
71.5
M2_47
71.2
M2_48
70.9
M2_49
70.8
M2_50
70.4
M2_51
70.0
M2_52
69.6
M2_53
69.5
M2_54
69.0
M2_55
68.7
M2_56
68.6
M2_57
68.4
M2_58
68.2
M2_59
68.1
M2_60
67.8
M2_61
67.5
M2_62
67.4
M2_63
66.8
M2_64
66.8
M2_65
66.6
M2_66
66.2
M2_67
65.3
M2_68
65.1
M2_69
65.1
M2_70
64.9
M2_71
63.8
M2_72
63.4
M2_73
62.9
M2_74
62.4
M2_75
62.1
M2_76
61.7
M2_77
61.2
M2_78
60.7
M2_79
60.5
M2_80
60.0
M2_81
59.7
M2_82
59.4
M2_83
58.8
M2_84
58.2
M2_85
57.3
M2_86
56.8
M2_87
54.6
M2_88
53.3
M2_89
51.3
M2_90
38.6
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