A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.5
nTPM
Monaco:
141.4
nTPM
Schmiedel:
83.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
HPA sample
nTPM
Memory B-cell nTPM: 22.5
Samples: 6
Max nTPM: 25.8
Min nTPM: 17.3
P10809_1017
24.9
P10809_1025
25.8
P10809_1044
17.3
P10809_1063
21.7
P10809_1092
23.7
P10809_1105
21.3
Naive B-cell nTPM: 16.8
Samples: 6
Max nTPM: 23.7
Min nTPM: 12.2
P10809_1011
14.0
P10809_1029
20.8
P10809_1048
23.7
P10809_1067
12.2
P10809_1091
14.3
P10809_1104
15.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 114.7
Samples: 4
Max nTPM: 133.9
Min nTPM: 97.6
RHH5310_R3677
115.2
RHH5218_R3590
112.2
RHH5247_R3619
133.9
RHH5276_R3648
97.6
Naive B-cell nTPM: 141.3
Samples: 4
Max nTPM: 183.1
Min nTPM: 86.0
RHH5308_R3675
86.0
RHH5216_R3588
183.1
RHH5245_R3617
175.9
RHH5274_R3646
120.3
Non-switched memory B-cell nTPM: 138.9
Samples: 4
Max nTPM: 154.1
Min nTPM: 126.3
RHH5309_R3676
140.7
RHH5217_R3589
126.3
RHH5246_R3618
134.6
RHH5275_R3647
154.1
Plasmablast nTPM: 111.4
Samples: 4
Max nTPM: 133.3
Min nTPM: 79.6
RHH5312_R3679
125.1
RHH5220_R3592
79.6
RHH5249_R3621
133.3
RHH5278_R3650
107.7
Switched memory B-cell nTPM: 110.1
Samples: 4
Max nTPM: 125.7
Min nTPM: 96.3
RHH5311_R3678
96.3
RHH5219_R3591
98.6
RHH5248_R3620
119.8
RHH5277_R3649
125.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.0
Schmiedel sample id
TPM
Naive B-cell TPM: 83.0
Samples: 91
Max TPM: 151.1
Min TPM: 53.3
B_CELL_NAIVE_1
151.1
B_CELL_NAIVE_2
125.3
B_CELL_NAIVE_3
122.9
B_CELL_NAIVE_4
117.3
B_CELL_NAIVE_5
114.9
B_CELL_NAIVE_6
114.7
B_CELL_NAIVE_7
114.1
B_CELL_NAIVE_8
111.8
B_CELL_NAIVE_9
105.2
B_CELL_NAIVE_10
103.3
B_CELL_NAIVE_11
100.0
B_CELL_NAIVE_12
99.5
B_CELL_NAIVE_13
98.8
B_CELL_NAIVE_14
96.7
B_CELL_NAIVE_15
95.1
B_CELL_NAIVE_16
94.6
B_CELL_NAIVE_17
93.9
B_CELL_NAIVE_18
93.8
B_CELL_NAIVE_19
93.8
B_CELL_NAIVE_20
92.1
B_CELL_NAIVE_21
91.1
B_CELL_NAIVE_22
91.0
B_CELL_NAIVE_23
90.9
B_CELL_NAIVE_24
89.1
B_CELL_NAIVE_25
88.6
B_CELL_NAIVE_26
88.0
B_CELL_NAIVE_27
87.5
B_CELL_NAIVE_28
86.1
B_CELL_NAIVE_29
85.3
B_CELL_NAIVE_30
85.3
B_CELL_NAIVE_31
85.1
B_CELL_NAIVE_32
84.2
B_CELL_NAIVE_33
84.2
B_CELL_NAIVE_34
84.0
B_CELL_NAIVE_35
83.6
B_CELL_NAIVE_36
83.6
B_CELL_NAIVE_37
83.4
B_CELL_NAIVE_38
83.1
B_CELL_NAIVE_39
82.5
B_CELL_NAIVE_40
82.2
B_CELL_NAIVE_41
81.5
B_CELL_NAIVE_42
80.1
B_CELL_NAIVE_43
79.7
B_CELL_NAIVE_44
79.7
B_CELL_NAIVE_45
79.2
B_CELL_NAIVE_46
78.8
B_CELL_NAIVE_47
78.6
B_CELL_NAIVE_48
78.4
B_CELL_NAIVE_49
78.2
B_CELL_NAIVE_50
78.1
B_CELL_NAIVE_51
78.0
B_CELL_NAIVE_52
77.4
B_CELL_NAIVE_53
77.1
B_CELL_NAIVE_54
76.9
B_CELL_NAIVE_55
76.7
B_CELL_NAIVE_56
76.0
B_CELL_NAIVE_57
76.0
B_CELL_NAIVE_58
76.0
B_CELL_NAIVE_59
75.9
B_CELL_NAIVE_60
75.9
B_CELL_NAIVE_61
75.7
B_CELL_NAIVE_62
75.6
B_CELL_NAIVE_63
75.4
B_CELL_NAIVE_64
74.8
B_CELL_NAIVE_65
74.8
B_CELL_NAIVE_66
74.6
B_CELL_NAIVE_67
74.2
B_CELL_NAIVE_68
73.9
B_CELL_NAIVE_69
73.7
B_CELL_NAIVE_70
72.8
B_CELL_NAIVE_71
71.8
B_CELL_NAIVE_72
71.5
B_CELL_NAIVE_73
71.1
B_CELL_NAIVE_74
70.7
B_CELL_NAIVE_75
70.4
B_CELL_NAIVE_76
69.9
B_CELL_NAIVE_77
69.0
B_CELL_NAIVE_78
68.9
B_CELL_NAIVE_79
68.5
B_CELL_NAIVE_80
68.0
B_CELL_NAIVE_81
67.9
B_CELL_NAIVE_82
67.3
B_CELL_NAIVE_83
67.2
B_CELL_NAIVE_84
66.4
B_CELL_NAIVE_85
65.2
B_CELL_NAIVE_86
64.8
B_CELL_NAIVE_87
64.4
B_CELL_NAIVE_88
62.1
B_CELL_NAIVE_89
56.2
B_CELL_NAIVE_90
54.5
B_CELL_NAIVE_91
53.3
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The Human Protein Atlas project is funded
