A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.3
nTPM
Monaco:
70.8
nTPM
Schmiedel:
29.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
HPA sample
nTPM
Classical monocyte nTPM: 12.3
Samples: 6
Max nTPM: 15.0
Min nTPM: 8.9
P10809_1003
14.3
P10809_1020
14.6
P10809_1039
15.0
P10809_1058
8.9
P10809_1080
10.6
P10809_1107
10.3
Intermediate monocyte nTPM: 10.6
Samples: 6
Max nTPM: 13.3
Min nTPM: 8.2
P10809_1004
12.3
P10809_1023
10.4
P10809_1042
10.6
P10809_1061
13.3
P10809_1081
8.9
P10809_1108
8.2
Non-classical monocyte nTPM: 9.9
Samples: 5
Max nTPM: 21.4
Min nTPM: 4.5
P10809_1005
8.4
P10809_1053
9.1
P10809_1072
21.4
P10809_1082
4.5
P10809_1109
6.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.8
Monaco sample
nTPM
Classical monocyte nTPM: 70.8
Samples: 4
Max nTPM: 82.7
Min nTPM: 63.9
RHH5313_R3680
69.2
RHH5221_R3593
82.7
RHH5250_R3622
63.9
RHH5279_R3651
67.5
Intermediate monocyte nTPM: 39.7
Samples: 4
Max nTPM: 47.0
Min nTPM: 31.3
RHH5314_R3681
38.6
RHH5222_R3594
47.0
RHH5251_R3623
31.3
RHH5280_R3652
41.7
Non-classical monocyte nTPM: 45.0
Samples: 4
Max nTPM: 53.6
Min nTPM: 39.7
RHH5315_R3682
39.7
RHH5223_R3595
53.6
RHH5252_R3624
42.9
RHH5281_R3653
43.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
Schmiedel sample id
TPM
Classical monocyte TPM: 29.3
Samples: 91
Max TPM: 39.3
Min TPM: 21.8
MONOCYTES_1
39.3
MONOCYTES_2
38.6
MONOCYTES_3
37.9
MONOCYTES_4
36.9
MONOCYTES_5
36.5
MONOCYTES_6
35.6
MONOCYTES_7
35.3
MONOCYTES_8
35.3
MONOCYTES_9
35.2
MONOCYTES_10
35.0
MONOCYTES_11
35.0
MONOCYTES_12
34.9
MONOCYTES_13
34.4
MONOCYTES_14
34.3
MONOCYTES_15
34.2
MONOCYTES_16
34.2
MONOCYTES_17
34.1
MONOCYTES_18
33.6
MONOCYTES_19
33.6
MONOCYTES_20
33.6
MONOCYTES_21
33.4
MONOCYTES_22
33.0
MONOCYTES_23
33.0
MONOCYTES_24
32.3
MONOCYTES_25
32.2
MONOCYTES_26
32.1
MONOCYTES_27
31.6
MONOCYTES_28
31.5
MONOCYTES_29
31.5
MONOCYTES_30
31.3
MONOCYTES_31
31.3
MONOCYTES_32
31.1
MONOCYTES_33
30.5
MONOCYTES_34
30.2
MONOCYTES_35
30.2
MONOCYTES_36
30.0
MONOCYTES_37
29.6
MONOCYTES_38
29.6
MONOCYTES_39
29.4
MONOCYTES_40
29.3
MONOCYTES_41
29.2
MONOCYTES_42
29.2
MONOCYTES_43
29.0
MONOCYTES_44
28.8
MONOCYTES_45
28.7
MONOCYTES_46
28.7
MONOCYTES_47
28.7
MONOCYTES_48
28.7
MONOCYTES_49
28.6
MONOCYTES_50
28.6
MONOCYTES_51
28.5
MONOCYTES_52
28.1
MONOCYTES_53
28.1
MONOCYTES_54
28.1
MONOCYTES_55
28.1
MONOCYTES_56
28.0
MONOCYTES_57
27.9
MONOCYTES_58
27.9
MONOCYTES_59
27.8
MONOCYTES_60
27.6
MONOCYTES_61
27.5
MONOCYTES_62
27.4
MONOCYTES_63
27.3
MONOCYTES_64
27.1
MONOCYTES_65
27.0
MONOCYTES_66
27.0
MONOCYTES_67
26.8
MONOCYTES_68
26.2
MONOCYTES_69
26.0
MONOCYTES_70
26.0
MONOCYTES_71
25.9
MONOCYTES_72
25.9
MONOCYTES_73
25.5
MONOCYTES_74
25.0
MONOCYTES_75
24.8
MONOCYTES_76
24.8
MONOCYTES_77
24.8
MONOCYTES_78
24.6
MONOCYTES_79
24.2
MONOCYTES_80
24.2
MONOCYTES_81
24.2
MONOCYTES_82
23.8
MONOCYTES_83
23.7
MONOCYTES_84
23.7
MONOCYTES_85
22.9
MONOCYTES_86
22.9
MONOCYTES_87
22.8
MONOCYTES_88
22.7
MONOCYTES_89
22.3
MONOCYTES_90
22.2
MONOCYTES_91
21.8
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Non-classical monocyte TPM: 19.6
Samples: 90
Max TPM: 33.6
Min TPM: 12.2
M2_1
33.6
M2_2
29.3
M2_3
27.8
M2_4
27.5
M2_5
27.4
M2_6
27.3
M2_7
27.0
M2_8
26.3
M2_9
25.9
M2_10
25.9
M2_11
25.1
M2_12
24.8
M2_13
24.4
M2_14
24.2
M2_15
24.0
M2_16
23.9
M2_17
23.9
M2_18
23.8
M2_19
23.8
M2_20
23.5
M2_21
22.5
M2_22
22.5
M2_23
22.1
M2_24
21.9
M2_25
21.7
M2_26
20.8
M2_27
20.7
M2_28
20.7
M2_29
20.7
M2_30
20.3
M2_31
20.1
M2_32
19.7
M2_33
19.7
M2_34
19.4
M2_35
19.3
M2_36
19.3
M2_37
19.3
M2_38
19.2
M2_39
19.2
M2_40
19.1
M2_41
19.0
M2_42
19.0
M2_43
19.0
M2_44
18.9
M2_45
18.6
M2_46
18.6
M2_47
18.5
M2_48
18.4
M2_49
18.3
M2_50
18.3
M2_51
18.2
M2_52
18.0
M2_53
18.0
M2_54
18.0
M2_55
18.0
M2_56
17.8
M2_57
17.7
M2_58
17.6
M2_59
17.5
M2_60
17.3
M2_61
17.2
M2_62
17.2
M2_63
17.2
M2_64
17.2
M2_65
17.1
M2_66
17.1
M2_67
17.1
M2_68
17.1
M2_69
17.0
M2_70
16.9
M2_71
16.8
M2_72
16.8
M2_73
16.7
M2_74
16.5
M2_75
16.5
M2_76
15.6
M2_77
15.5
M2_78
15.4
M2_79
15.3
M2_80
15.3
M2_81
15.2
M2_82
15.2
M2_83
15.0
M2_84
14.7
M2_85
14.5
M2_86
14.4
M2_87
14.0
M2_88
13.4
M2_89
13.3
M2_90
12.2
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