A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.5
nTPM
Monaco:
118.9
nTPM
Schmiedel:
81.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.5
HPA sample
nTPM
Memory B-cell nTPM: 19.8
Samples: 6
Max nTPM: 31.7
Min nTPM: 13.2
P10809_1017
13.2
P10809_1025
20.7
P10809_1044
31.7
P10809_1063
17.9
P10809_1092
16.1
P10809_1105
19.1
Naive B-cell nTPM: 21.5
Samples: 6
Max nTPM: 26.6
Min nTPM: 18.0
P10809_1011
18.7
P10809_1029
22.7
P10809_1048
20.5
P10809_1067
26.6
P10809_1091
18.0
P10809_1104
22.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 104.3
Samples: 4
Max nTPM: 130.4
Min nTPM: 78.0
RHH5310_R3677
78.0
RHH5218_R3590
130.4
RHH5247_R3619
105.3
RHH5276_R3648
103.4
Naive B-cell nTPM: 118.9
Samples: 4
Max nTPM: 134.6
Min nTPM: 112.5
RHH5308_R3675
112.8
RHH5216_R3588
112.5
RHH5245_R3617
134.6
RHH5274_R3646
115.9
Non-switched memory B-cell nTPM: 116.1
Samples: 4
Max nTPM: 138.4
Min nTPM: 85.4
RHH5309_R3676
85.4
RHH5217_R3589
138.4
RHH5246_R3618
130.4
RHH5275_R3647
110.2
Plasmablast nTPM: 78.7
Samples: 4
Max nTPM: 100.7
Min nTPM: 55.5
RHH5312_R3679
100.7
RHH5220_R3592
55.5
RHH5249_R3621
87.0
RHH5278_R3650
71.6
Switched memory B-cell nTPM: 105.0
Samples: 4
Max nTPM: 114.6
Min nTPM: 91.8
RHH5311_R3678
91.8
RHH5219_R3591
100.2
RHH5248_R3620
114.6
RHH5277_R3649
113.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.7
Schmiedel sample id
TPM
Naive B-cell TPM: 81.7
Samples: 91
Max TPM: 127.0
Min TPM: 47.7
B_CELL_NAIVE_1
127.0
B_CELL_NAIVE_2
126.7
B_CELL_NAIVE_3
121.1
B_CELL_NAIVE_4
113.0
B_CELL_NAIVE_5
111.4
B_CELL_NAIVE_6
111.0
B_CELL_NAIVE_7
110.9
B_CELL_NAIVE_8
106.3
B_CELL_NAIVE_9
104.6
B_CELL_NAIVE_10
94.6
B_CELL_NAIVE_11
94.4
B_CELL_NAIVE_12
93.5
B_CELL_NAIVE_13
93.5
B_CELL_NAIVE_14
92.2
B_CELL_NAIVE_15
90.8
B_CELL_NAIVE_16
90.1
B_CELL_NAIVE_17
89.8
B_CELL_NAIVE_18
89.4
B_CELL_NAIVE_19
89.3
B_CELL_NAIVE_20
88.9
B_CELL_NAIVE_21
88.4
B_CELL_NAIVE_22
88.1
B_CELL_NAIVE_23
87.7
B_CELL_NAIVE_24
87.3
B_CELL_NAIVE_25
87.0
B_CELL_NAIVE_26
86.2
B_CELL_NAIVE_27
84.5
B_CELL_NAIVE_28
84.4
B_CELL_NAIVE_29
84.3
B_CELL_NAIVE_30
84.2
B_CELL_NAIVE_31
84.0
B_CELL_NAIVE_32
83.9
B_CELL_NAIVE_33
82.9
B_CELL_NAIVE_34
82.7
B_CELL_NAIVE_35
82.6
B_CELL_NAIVE_36
82.1
B_CELL_NAIVE_37
82.0
B_CELL_NAIVE_38
81.9
B_CELL_NAIVE_39
80.9
B_CELL_NAIVE_40
80.8
B_CELL_NAIVE_41
80.6
B_CELL_NAIVE_42
80.2
B_CELL_NAIVE_43
80.0
B_CELL_NAIVE_44
80.0
B_CELL_NAIVE_45
79.6
B_CELL_NAIVE_46
79.1
B_CELL_NAIVE_47
78.8
B_CELL_NAIVE_48
78.7
B_CELL_NAIVE_49
78.7
B_CELL_NAIVE_50
78.2
B_CELL_NAIVE_51
78.0
B_CELL_NAIVE_52
77.5
B_CELL_NAIVE_53
77.3
B_CELL_NAIVE_54
77.2
B_CELL_NAIVE_55
77.1
B_CELL_NAIVE_56
76.9
B_CELL_NAIVE_57
76.8
B_CELL_NAIVE_58
76.3
B_CELL_NAIVE_59
76.2
B_CELL_NAIVE_60
76.1
B_CELL_NAIVE_61
76.1
B_CELL_NAIVE_62
76.0
B_CELL_NAIVE_63
75.3
B_CELL_NAIVE_64
74.6
B_CELL_NAIVE_65
74.5
B_CELL_NAIVE_66
74.4
B_CELL_NAIVE_67
74.3
B_CELL_NAIVE_68
73.9
B_CELL_NAIVE_69
73.4
B_CELL_NAIVE_70
72.4
B_CELL_NAIVE_71
72.3
B_CELL_NAIVE_72
72.1
B_CELL_NAIVE_73
71.8
B_CELL_NAIVE_74
71.3
B_CELL_NAIVE_75
71.2
B_CELL_NAIVE_76
70.4
B_CELL_NAIVE_77
69.9
B_CELL_NAIVE_78
69.5
B_CELL_NAIVE_79
69.4
B_CELL_NAIVE_80
69.3
B_CELL_NAIVE_81
69.2
B_CELL_NAIVE_82
68.4
B_CELL_NAIVE_83
68.2
B_CELL_NAIVE_84
67.2
B_CELL_NAIVE_85
67.0
B_CELL_NAIVE_86
65.7
B_CELL_NAIVE_87
65.2
B_CELL_NAIVE_88
64.7
B_CELL_NAIVE_89
60.5
B_CELL_NAIVE_90
52.9
B_CELL_NAIVE_91
47.7
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