A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.7
nTPM
Monaco:
139.4
nTPM
Schmiedel:
80.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
HPA sample
nTPM
Classical monocyte nTPM: 21.7
Samples: 6
Max nTPM: 24.1
Min nTPM: 17.6
P10809_1003
17.6
P10809_1020
23.4
P10809_1039
21.3
P10809_1058
22.8
P10809_1080
24.1
P10809_1107
21.2
Intermediate monocyte nTPM: 22.3
Samples: 6
Max nTPM: 31.3
Min nTPM: 15.9
P10809_1004
20.6
P10809_1023
19.2
P10809_1042
15.9
P10809_1061
31.3
P10809_1081
23.6
P10809_1108
22.9
Non-classical monocyte nTPM: 29.7
Samples: 5
Max nTPM: 55.9
Min nTPM: 18.3
P10809_1005
21.1
P10809_1053
25.1
P10809_1072
55.9
P10809_1082
28.3
P10809_1109
18.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.4
Monaco sample
nTPM
Classical monocyte nTPM: 129.2
Samples: 4
Max nTPM: 151.3
Min nTPM: 110.0
RHH5313_R3680
132.7
RHH5221_R3593
151.3
RHH5250_R3622
110.0
RHH5279_R3651
122.9
Intermediate monocyte nTPM: 108.7
Samples: 4
Max nTPM: 119.6
Min nTPM: 95.1
RHH5314_R3681
104.0
RHH5222_R3594
95.1
RHH5251_R3623
119.6
RHH5280_R3652
116.1
Non-classical monocyte nTPM: 139.4
Samples: 4
Max nTPM: 172.6
Min nTPM: 118.8
RHH5315_R3682
120.2
RHH5223_R3595
172.6
RHH5252_R3624
118.8
RHH5281_R3653
145.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.6
Schmiedel sample id
TPM
Classical monocyte TPM: 49.0
Samples: 91
Max TPM: 66.8
Min TPM: 33.1
MONOCYTES_1
66.8
MONOCYTES_2
65.0
MONOCYTES_3
61.9
MONOCYTES_4
61.1
MONOCYTES_5
61.0
MONOCYTES_6
60.5
MONOCYTES_7
60.1
MONOCYTES_8
58.8
MONOCYTES_9
58.6
MONOCYTES_10
58.2
MONOCYTES_11
57.8
MONOCYTES_12
57.4
MONOCYTES_13
57.1
MONOCYTES_14
56.6
MONOCYTES_15
55.7
MONOCYTES_16
55.6
MONOCYTES_17
55.5
MONOCYTES_18
54.5
MONOCYTES_19
54.1
MONOCYTES_20
53.9
MONOCYTES_21
53.5
MONOCYTES_22
53.3
MONOCYTES_23
53.2
MONOCYTES_24
53.1
MONOCYTES_25
53.0
MONOCYTES_26
52.1
MONOCYTES_27
51.9
MONOCYTES_28
51.8
MONOCYTES_29
51.7
MONOCYTES_30
51.6
MONOCYTES_31
51.3
MONOCYTES_32
50.8
MONOCYTES_33
50.6
MONOCYTES_34
50.5
MONOCYTES_35
50.3
MONOCYTES_36
49.7
MONOCYTES_37
49.4
MONOCYTES_38
49.3
MONOCYTES_39
49.0
MONOCYTES_40
48.9
MONOCYTES_41
48.8
MONOCYTES_42
48.8
MONOCYTES_43
48.8
MONOCYTES_44
48.5
MONOCYTES_45
48.4
MONOCYTES_46
48.2
MONOCYTES_47
48.2
MONOCYTES_48
48.1
MONOCYTES_49
48.1
MONOCYTES_50
47.6
MONOCYTES_51
47.6
MONOCYTES_52
47.5
MONOCYTES_53
47.4
MONOCYTES_54
47.4
MONOCYTES_55
47.3
MONOCYTES_56
47.1
MONOCYTES_57
47.1
MONOCYTES_58
47.0
MONOCYTES_59
46.5
MONOCYTES_60
46.3
MONOCYTES_61
46.0
MONOCYTES_62
45.8
MONOCYTES_63
45.7
MONOCYTES_64
45.5
MONOCYTES_65
45.5
MONOCYTES_66
45.5
MONOCYTES_67
45.3
MONOCYTES_68
45.0
MONOCYTES_69
44.7
MONOCYTES_70
44.5
MONOCYTES_71
44.4
MONOCYTES_72
44.3
MONOCYTES_73
44.0
MONOCYTES_74
43.9
MONOCYTES_75
43.5
MONOCYTES_76
43.3
MONOCYTES_77
42.9
MONOCYTES_78
42.6
MONOCYTES_79
42.0
MONOCYTES_80
41.9
MONOCYTES_81
40.8
MONOCYTES_82
40.8
MONOCYTES_83
40.8
MONOCYTES_84
40.7
MONOCYTES_85
39.7
MONOCYTES_86
38.7
MONOCYTES_87
38.3
MONOCYTES_88
37.2
MONOCYTES_89
36.2
MONOCYTES_90
35.7
MONOCYTES_91
33.1
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Non-classical monocyte TPM: 80.6
Samples: 90
Max TPM: 113.0
Min TPM: 51.0
M2_1
113.0
M2_2
111.8
M2_3
109.5
M2_4
109.2
M2_5
107.4
M2_6
107.0
M2_7
106.6
M2_8
106.1
M2_9
104.4
M2_10
103.8
M2_11
103.3
M2_12
102.7
M2_13
97.5
M2_14
95.8
M2_15
93.6
M2_16
93.3
M2_17
92.2
M2_18
89.6
M2_19
89.0
M2_20
88.6
M2_21
88.1
M2_22
87.2
M2_23
86.8
M2_24
86.7
M2_25
86.2
M2_26
85.3
M2_27
85.2
M2_28
85.1
M2_29
85.0
M2_30
83.7
M2_31
83.5
M2_32
82.1
M2_33
82.1
M2_34
81.9
M2_35
81.8
M2_36
81.3
M2_37
81.1
M2_38
81.0
M2_39
81.0
M2_40
79.7
M2_41
79.4
M2_42
79.3
M2_43
79.1
M2_44
79.0
M2_45
78.2
M2_46
77.9
M2_47
77.8
M2_48
77.6
M2_49
77.5
M2_50
77.4
M2_51
77.4
M2_52
77.1
M2_53
76.9
M2_54
75.8
M2_55
75.5
M2_56
75.2
M2_57
74.4
M2_58
74.0
M2_59
73.1
M2_60
73.0
M2_61
73.0
M2_62
73.0
M2_63
72.5
M2_64
72.0
M2_65
71.4
M2_66
70.5
M2_67
70.3
M2_68
70.2
M2_69
70.1
M2_70
70.0
M2_71
70.0
M2_72
69.7
M2_73
69.6
M2_74
69.5
M2_75
69.4
M2_76
68.8
M2_77
68.5
M2_78
68.3
M2_79
68.2
M2_80
67.5
M2_81
67.1
M2_82
66.9
M2_83
66.5
M2_84
62.7
M2_85
62.1
M2_86
61.9
M2_87
61.2
M2_88
60.1
M2_89
59.3
M2_90
51.0
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