A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.2
nTPM
Monaco:
112.4
nTPM
Schmiedel:
159.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.2
HPA sample
nTPM
NK-cell nTPM: 19.2
Samples: 6
Max nTPM: 29.5
Min nTPM: 8.6
P10809_1013
14.6
P10809_1033
29.5
P10809_1052
8.6
P10809_1071
17.9
P10809_1093
29.1
P10809_1103
15.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.4
Monaco sample
nTPM
NK-cell nTPM: 112.4
Samples: 4
Max nTPM: 124.2
Min nTPM: 103.9
RHH5316_R3683
103.9
RHH5224_R3596
124.2
RHH5253_R3625
115.5
RHH5282_R3654
105.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.9
Schmiedel sample id
TPM
NK-cell TPM: 159.9
Samples: 90
Max TPM: 221.3
Min TPM: 117.2
NK_1
221.3
NK_2
211.8
NK_3
202.7
NK_4
202.1
NK_5
200.7
NK_6
199.7
NK_7
197.7
NK_8
196.5
NK_9
195.8
NK_10
195.0
NK_11
188.9
NK_12
184.8
NK_13
180.3
NK_14
179.8
NK_15
179.0
NK_16
178.9
NK_17
178.7
NK_18
177.8
NK_19
175.7
NK_20
173.7
NK_21
173.3
NK_22
172.5
NK_23
171.9
NK_24
171.7
NK_25
170.8
NK_26
169.4
NK_27
169.3
NK_28
169.0
NK_29
168.4
NK_30
166.7
NK_31
166.3
NK_32
166.2
NK_33
164.9
NK_34
164.5
NK_35
164.0
NK_36
163.6
NK_37
163.2
NK_38
162.9
NK_39
162.7
NK_40
162.1
NK_41
161.3
NK_42
160.6
NK_43
160.1
NK_44
159.7
NK_45
157.8
NK_46
157.1
NK_47
156.6
NK_48
156.5
NK_49
156.1
NK_50
156.0
NK_51
155.9
NK_52
154.4
NK_53
153.6
NK_54
153.6
NK_55
152.6
NK_56
150.9
NK_57
149.3
NK_58
148.8
NK_59
148.1
NK_60
148.1
NK_61
147.9
NK_62
146.3
NK_63
145.5
NK_64
145.1
NK_65
145.0
NK_66
144.7
NK_67
144.6
NK_68
143.8
NK_69
143.3
NK_70
143.0
NK_71
142.8
NK_72
142.6
NK_73
142.3
NK_74
139.0
NK_75
138.4
NK_76
137.9
NK_77
137.7
NK_78
137.3
NK_79
137.2
NK_80
136.5
NK_81
135.3
NK_82
134.9
NK_83
134.9
NK_84
134.7
NK_85
133.5
NK_86
127.7
NK_87
126.7
NK_88
126.5
NK_89
117.6
NK_90
117.2
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