A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.2
nTPM
Monaco:
100.8
nTPM
Schmiedel:
225.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.2
HPA sample
nTPM
Classical monocyte nTPM: 23.8
Samples: 6
Max nTPM: 28.8
Min nTPM: 17.8
P10809_1003
17.8
P10809_1020
21.8
P10809_1039
24.0
P10809_1058
28.5
P10809_1080
28.8
P10809_1107
22.2
Intermediate monocyte nTPM: 23.6
Samples: 6
Max nTPM: 31.6
Min nTPM: 17.8
P10809_1004
17.8
P10809_1023
20.5
P10809_1042
19.9
P10809_1061
31.3
P10809_1081
31.6
P10809_1108
20.7
Non-classical monocyte nTPM: 39.2
Samples: 5
Max nTPM: 94.9
Min nTPM: 16.3
P10809_1005
16.3
P10809_1053
20.5
P10809_1072
94.9
P10809_1082
43.6
P10809_1109
20.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.8
Monaco sample
nTPM
Classical monocyte nTPM: 87.1
Samples: 4
Max nTPM: 113.7
Min nTPM: 72.3
RHH5313_R3680
85.1
RHH5221_R3593
72.3
RHH5250_R3622
113.7
RHH5279_R3651
77.4
Intermediate monocyte nTPM: 100.9
Samples: 4
Max nTPM: 122.9
Min nTPM: 66.1
RHH5314_R3681
112.9
RHH5222_R3594
66.1
RHH5251_R3623
101.5
RHH5280_R3652
122.9
Non-classical monocyte nTPM: 95.5
Samples: 4
Max nTPM: 106.7
Min nTPM: 87.8
RHH5315_R3682
92.4
RHH5223_R3595
87.8
RHH5252_R3624
94.9
RHH5281_R3653
106.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.5
Schmiedel sample id
TPM
Classical monocyte TPM: 141.0
Samples: 91
Max TPM: 186.5
Min TPM: 101.0
MONOCYTES_1
186.5
MONOCYTES_2
185.4
MONOCYTES_3
181.9
MONOCYTES_4
177.7
MONOCYTES_5
174.5
MONOCYTES_6
171.8
MONOCYTES_7
171.0
MONOCYTES_8
169.0
MONOCYTES_9
168.4
MONOCYTES_10
168.0
MONOCYTES_11
166.3
MONOCYTES_12
161.9
MONOCYTES_13
161.4
MONOCYTES_14
160.4
MONOCYTES_15
159.4
MONOCYTES_16
159.1
MONOCYTES_17
158.3
MONOCYTES_18
156.9
MONOCYTES_19
156.4
MONOCYTES_20
156.0
MONOCYTES_21
153.9
MONOCYTES_22
153.6
MONOCYTES_23
153.2
MONOCYTES_24
153.1
MONOCYTES_25
152.7
MONOCYTES_26
152.6
MONOCYTES_27
152.2
MONOCYTES_28
152.1
MONOCYTES_29
152.0
MONOCYTES_30
151.7
MONOCYTES_31
151.4
MONOCYTES_32
151.3
MONOCYTES_33
150.1
MONOCYTES_34
149.9
MONOCYTES_35
148.4
MONOCYTES_36
148.3
MONOCYTES_37
147.2
MONOCYTES_38
146.9
MONOCYTES_39
146.7
MONOCYTES_40
146.1
MONOCYTES_41
145.2
MONOCYTES_42
144.8
MONOCYTES_43
144.5
MONOCYTES_44
143.3
MONOCYTES_45
142.7
MONOCYTES_46
142.6
MONOCYTES_47
140.7
MONOCYTES_48
140.6
MONOCYTES_49
140.2
MONOCYTES_50
137.8
MONOCYTES_51
137.3
MONOCYTES_52
136.7
MONOCYTES_53
135.7
MONOCYTES_54
135.7
MONOCYTES_55
135.5
MONOCYTES_56
134.7
MONOCYTES_57
134.6
MONOCYTES_58
133.7
MONOCYTES_59
131.7
MONOCYTES_60
131.7
MONOCYTES_61
131.5
MONOCYTES_62
129.8
MONOCYTES_63
129.2
MONOCYTES_64
128.8
MONOCYTES_65
128.3
MONOCYTES_66
128.0
MONOCYTES_67
127.2
MONOCYTES_68
126.7
MONOCYTES_69
126.4
MONOCYTES_70
125.9
MONOCYTES_71
125.2
MONOCYTES_72
124.3
MONOCYTES_73
123.5
MONOCYTES_74
122.5
MONOCYTES_75
122.1
MONOCYTES_76
122.1
MONOCYTES_77
118.9
MONOCYTES_78
118.8
MONOCYTES_79
116.6
MONOCYTES_80
116.5
MONOCYTES_81
116.2
MONOCYTES_82
114.7
MONOCYTES_83
114.1
MONOCYTES_84
112.8
MONOCYTES_85
112.3
MONOCYTES_86
110.5
MONOCYTES_87
108.9
MONOCYTES_88
107.6
MONOCYTES_89
103.9
MONOCYTES_90
101.0
MONOCYTES_91
101.0
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Non-classical monocyte TPM: 225.5
Samples: 90
Max TPM: 302.2
Min TPM: 171.0
M2_1
302.2
M2_2
288.6
M2_3
281.9
M2_4
273.9
M2_5
270.8
M2_6
269.6
M2_7
269.2
M2_8
262.0
M2_9
261.6
M2_10
261.4
M2_11
258.0
M2_12
255.6
M2_13
255.4
M2_14
255.0
M2_15
252.1
M2_16
248.5
M2_17
247.2
M2_18
245.9
M2_19
244.9
M2_20
241.4
M2_21
241.3
M2_22
239.8
M2_23
238.8
M2_24
238.0
M2_25
236.5
M2_26
235.9
M2_27
235.5
M2_28
235.4
M2_29
235.2
M2_30
233.9
M2_31
233.0
M2_32
232.2
M2_33
231.8
M2_34
231.2
M2_35
230.5
M2_36
230.5
M2_37
230.4
M2_38
230.3
M2_39
229.9
M2_40
229.8
M2_41
229.4
M2_42
228.3
M2_43
227.8
M2_44
227.3
M2_45
224.9
M2_46
224.2
M2_47
222.8
M2_48
222.4
M2_49
222.2
M2_50
221.4
M2_51
221.0
M2_52
219.8
M2_53
219.1
M2_54
219.1
M2_55
217.0
M2_56
216.5
M2_57
215.6
M2_58
215.5
M2_59
214.3
M2_60
214.0
M2_61
211.6
M2_62
211.3
M2_63
210.5
M2_64
209.2
M2_65
207.2
M2_66
206.6
M2_67
206.5
M2_68
206.1
M2_69
205.9
M2_70
205.5
M2_71
205.3
M2_72
204.9
M2_73
204.6
M2_74
201.6
M2_75
199.8
M2_76
199.5
M2_77
199.4
M2_78
197.2
M2_79
197.0
M2_80
195.5
M2_81
193.4
M2_82
192.9
M2_83
192.9
M2_84
191.6
M2_85
190.6
M2_86
186.5
M2_87
184.1
M2_88
183.3
M2_89
180.3
M2_90
171.0
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