A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
13.5
nTPM
Schmiedel:
124.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Memory B-cell nTPM: 1.8
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.5
P10809_1017
3.1
P10809_1025
1.5
P10809_1044
0.5
P10809_1063
3.3
P10809_1092
0.8
P10809_1105
1.6
Naive B-cell nTPM: 1.5
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1011
1.5
P10809_1029
1.9
P10809_1048
0.0
P10809_1067
2.3
P10809_1091
0.9
P10809_1104
2.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.5
Samples: 4
Max nTPM: 20.1
Min nTPM: 7.0
RHH5310_R3677
7.0
RHH5218_R3590
20.1
RHH5247_R3619
19.3
RHH5276_R3648
7.7
Naive B-cell nTPM: 11.4
Samples: 4
Max nTPM: 14.1
Min nTPM: 8.5
RHH5308_R3675
14.1
RHH5216_R3588
10.0
RHH5245_R3617
8.5
RHH5274_R3646
13.0
Non-switched memory B-cell nTPM: 10.3
Samples: 4
Max nTPM: 13.0
Min nTPM: 6.2
RHH5309_R3676
11.4
RHH5217_R3589
13.0
RHH5246_R3618
6.2
RHH5275_R3647
10.7
Plasmablast nTPM: 11.5
Samples: 4
Max nTPM: 20.2
Min nTPM: 4.0
RHH5312_R3679
7.9
RHH5220_R3592
4.0
RHH5249_R3621
20.2
RHH5278_R3650
13.9
Switched memory B-cell nTPM: 7.4
Samples: 4
Max nTPM: 11.1
Min nTPM: 3.3
RHH5311_R3678
3.3
RHH5219_R3591
10.4
RHH5248_R3620
11.1
RHH5277_R3649
5.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
124.8
Schmiedel sample id
TPM
Naive B-cell TPM: 124.8
Samples: 91
Max TPM: 247.9
Min TPM: 76.9
B_CELL_NAIVE_1
247.9
B_CELL_NAIVE_2
217.7
B_CELL_NAIVE_3
203.5
B_CELL_NAIVE_4
186.0
B_CELL_NAIVE_5
179.5
B_CELL_NAIVE_6
178.5
B_CELL_NAIVE_7
171.4
B_CELL_NAIVE_8
164.0
B_CELL_NAIVE_9
162.7
B_CELL_NAIVE_10
158.2
B_CELL_NAIVE_11
156.8
B_CELL_NAIVE_12
155.3
B_CELL_NAIVE_13
152.0
B_CELL_NAIVE_14
148.4
B_CELL_NAIVE_15
148.4
B_CELL_NAIVE_16
144.8
B_CELL_NAIVE_17
143.0
B_CELL_NAIVE_18
142.7
B_CELL_NAIVE_19
142.6
B_CELL_NAIVE_20
139.5
B_CELL_NAIVE_21
139.5
B_CELL_NAIVE_22
138.8
B_CELL_NAIVE_23
134.6
B_CELL_NAIVE_24
133.6
B_CELL_NAIVE_25
133.0
B_CELL_NAIVE_26
130.6
B_CELL_NAIVE_27
130.5
B_CELL_NAIVE_28
129.4
B_CELL_NAIVE_29
129.2
B_CELL_NAIVE_30
128.8
B_CELL_NAIVE_31
128.2
B_CELL_NAIVE_32
127.6
B_CELL_NAIVE_33
127.2
B_CELL_NAIVE_34
127.2
B_CELL_NAIVE_35
126.4
B_CELL_NAIVE_36
126.0
B_CELL_NAIVE_37
125.7
B_CELL_NAIVE_38
125.6
B_CELL_NAIVE_39
124.4
B_CELL_NAIVE_40
122.6
B_CELL_NAIVE_41
122.3
B_CELL_NAIVE_42
122.2
B_CELL_NAIVE_43
122.0
B_CELL_NAIVE_44
121.8
B_CELL_NAIVE_45
121.4
B_CELL_NAIVE_46
120.7
B_CELL_NAIVE_47
120.6
B_CELL_NAIVE_48
119.6
B_CELL_NAIVE_49
119.2
B_CELL_NAIVE_50
118.6
B_CELL_NAIVE_51
118.4
B_CELL_NAIVE_52
118.3
B_CELL_NAIVE_53
118.0
B_CELL_NAIVE_54
117.1
B_CELL_NAIVE_55
116.9
B_CELL_NAIVE_56
116.5
B_CELL_NAIVE_57
115.9
B_CELL_NAIVE_58
114.7
B_CELL_NAIVE_59
114.1
B_CELL_NAIVE_60
110.5
B_CELL_NAIVE_61
108.7
B_CELL_NAIVE_62
108.2
B_CELL_NAIVE_63
108.2
B_CELL_NAIVE_64
107.1
B_CELL_NAIVE_65
106.8
B_CELL_NAIVE_66
106.5
B_CELL_NAIVE_67
105.9
B_CELL_NAIVE_68
105.8
B_CELL_NAIVE_69
105.1
B_CELL_NAIVE_70
105.0
B_CELL_NAIVE_71
103.9
B_CELL_NAIVE_72
103.2
B_CELL_NAIVE_73
102.6
B_CELL_NAIVE_74
101.8
B_CELL_NAIVE_75
101.4
B_CELL_NAIVE_76
101.0
B_CELL_NAIVE_77
100.1
B_CELL_NAIVE_78
98.9
B_CELL_NAIVE_79
98.8
B_CELL_NAIVE_80
97.4
B_CELL_NAIVE_81
96.0
B_CELL_NAIVE_82
95.4
B_CELL_NAIVE_83
94.0
B_CELL_NAIVE_84
93.0
B_CELL_NAIVE_85
91.8
B_CELL_NAIVE_86
91.6
B_CELL_NAIVE_87
88.5
B_CELL_NAIVE_88
86.2
B_CELL_NAIVE_89
85.5
B_CELL_NAIVE_90
83.9
B_CELL_NAIVE_91
76.9
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The Human Protein Atlas project is funded
