A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
12.1
nTPM
Schmiedel:
60.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 6
Max nTPM: 3.2
Min nTPM: 1.0
P10809_1003
1.1
P10809_1020
1.6
P10809_1039
3.2
P10809_1058
2.6
P10809_1080
1.8
P10809_1107
1.0
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.3
P10809_1004
1.8
P10809_1023
1.0
P10809_1042
0.3
P10809_1061
2.3
P10809_1081
2.5
P10809_1108
4.3
Non-classical monocyte nTPM: 1.9
Samples: 5
Max nTPM: 3.1
Min nTPM: 0.0
P10809_1005
3.1
P10809_1053
2.1
P10809_1072
0.0
P10809_1082
1.8
P10809_1109
2.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.1
Monaco sample
nTPM
Classical monocyte nTPM: 8.5
Samples: 4
Max nTPM: 10.5
Min nTPM: 6.4
RHH5313_R3680
7.3
RHH5221_R3593
9.8
RHH5250_R3622
6.4
RHH5279_R3651
10.5
Intermediate monocyte nTPM: 10.7
Samples: 4
Max nTPM: 16.2
Min nTPM: 4.1
RHH5314_R3681
4.1
RHH5222_R3594
7.3
RHH5251_R3623
16.2
RHH5280_R3652
15.2
Non-classical monocyte nTPM: 12.1
Samples: 4
Max nTPM: 20.1
Min nTPM: 1.4
RHH5315_R3682
15.3
RHH5223_R3595
20.1
RHH5252_R3624
11.7
RHH5281_R3653
1.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Schmiedel sample id
TPM
Classical monocyte TPM: 30.7
Samples: 91
Max TPM: 44.8
Min TPM: 20.2
MONOCYTES_1
44.8
MONOCYTES_2
38.7
MONOCYTES_3
38.4
MONOCYTES_4
38.4
MONOCYTES_5
38.1
MONOCYTES_6
37.9
MONOCYTES_7
37.9
MONOCYTES_8
37.7
MONOCYTES_9
37.6
MONOCYTES_10
37.3
MONOCYTES_11
37.2
MONOCYTES_12
37.0
MONOCYTES_13
36.6
MONOCYTES_14
36.3
MONOCYTES_15
35.9
MONOCYTES_16
35.6
MONOCYTES_17
35.5
MONOCYTES_18
34.9
MONOCYTES_19
34.9
MONOCYTES_20
34.3
MONOCYTES_21
34.1
MONOCYTES_22
33.9
MONOCYTES_23
33.8
MONOCYTES_24
33.7
MONOCYTES_25
33.7
MONOCYTES_26
33.5
MONOCYTES_27
33.4
MONOCYTES_28
33.3
MONOCYTES_29
33.0
MONOCYTES_30
32.8
MONOCYTES_31
32.7
MONOCYTES_32
32.6
MONOCYTES_33
32.6
MONOCYTES_34
32.2
MONOCYTES_35
31.7
MONOCYTES_36
31.3
MONOCYTES_37
31.1
MONOCYTES_38
30.7
MONOCYTES_39
30.5
MONOCYTES_40
30.5
MONOCYTES_41
30.4
MONOCYTES_42
30.4
MONOCYTES_43
30.2
MONOCYTES_44
30.0
MONOCYTES_45
29.9
MONOCYTES_46
29.9
MONOCYTES_47
29.9
MONOCYTES_48
29.9
MONOCYTES_49
29.7
MONOCYTES_50
29.5
MONOCYTES_51
29.3
MONOCYTES_52
29.3
MONOCYTES_53
29.2
MONOCYTES_54
29.2
MONOCYTES_55
29.0
MONOCYTES_56
29.0
MONOCYTES_57
28.9
MONOCYTES_58
28.8
MONOCYTES_59
28.7
MONOCYTES_60
28.6
MONOCYTES_61
28.4
MONOCYTES_62
28.4
MONOCYTES_63
28.4
MONOCYTES_64
28.0
MONOCYTES_65
28.0
MONOCYTES_66
28.0
MONOCYTES_67
27.9
MONOCYTES_68
27.8
MONOCYTES_69
27.5
MONOCYTES_70
27.5
MONOCYTES_71
27.1
MONOCYTES_72
27.0
MONOCYTES_73
26.9
MONOCYTES_74
26.5
MONOCYTES_75
26.5
MONOCYTES_76
26.4
MONOCYTES_77
26.1
MONOCYTES_78
25.9
MONOCYTES_79
25.8
MONOCYTES_80
25.6
MONOCYTES_81
25.3
MONOCYTES_82
25.0
MONOCYTES_83
24.8
MONOCYTES_84
24.8
MONOCYTES_85
24.8
MONOCYTES_86
24.2
MONOCYTES_87
24.2
MONOCYTES_88
23.8
MONOCYTES_89
22.0
MONOCYTES_90
21.5
MONOCYTES_91
20.2
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Non-classical monocyte TPM: 60.5
Samples: 90
Max TPM: 89.9
Min TPM: 28.3
M2_1
89.9
M2_2
89.7
M2_3
88.9
M2_4
81.8
M2_5
81.3
M2_6
80.3
M2_7
77.4
M2_8
76.6
M2_9
76.3
M2_10
75.0
M2_11
74.5
M2_12
73.1
M2_13
72.7
M2_14
72.4
M2_15
71.5
M2_16
70.8
M2_17
70.6
M2_18
70.6
M2_19
70.4
M2_20
70.2
M2_21
67.3
M2_22
67.0
M2_23
66.8
M2_24
66.3
M2_25
65.9
M2_26
65.6
M2_27
65.5
M2_28
65.4
M2_29
65.2
M2_30
65.2
M2_31
64.9
M2_32
64.2
M2_33
63.5
M2_34
63.2
M2_35
63.2
M2_36
63.1
M2_37
62.8
M2_38
62.7
M2_39
62.4
M2_40
62.3
M2_41
61.7
M2_42
61.7
M2_43
61.2
M2_44
60.9
M2_45
60.9
M2_46
60.5
M2_47
59.7
M2_48
59.6
M2_49
59.5
M2_50
59.2
M2_51
59.1
M2_52
58.1
M2_53
57.7
M2_54
57.6
M2_55
57.5
M2_56
57.2
M2_57
56.7
M2_58
56.7
M2_59
56.4
M2_60
56.3
M2_61
56.1
M2_62
54.9
M2_63
54.6
M2_64
54.0
M2_65
53.5
M2_66
53.4
M2_67
53.3
M2_68
52.2
M2_69
52.1
M2_70
51.9
M2_71
49.3
M2_72
49.3
M2_73
49.3
M2_74
48.9
M2_75
48.8
M2_76
47.8
M2_77
47.6
M2_78
46.8
M2_79
46.6
M2_80
46.4
M2_81
46.2
M2_82
46.2
M2_83
45.7
M2_84
45.6
M2_85
45.4
M2_86
44.2
M2_87
44.0
M2_88
41.0
M2_89
37.0
M2_90
28.3
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