A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
14.9
nTPM
Schmiedel:
9.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Classical monocyte nTPM: 13.2
Samples: 6
Max nTPM: 17.3
Min nTPM: 10.7
P10809_1003
10.7
P10809_1020
14.9
P10809_1039
11.1
P10809_1058
10.8
P10809_1080
14.1
P10809_1107
17.3
Intermediate monocyte nTPM: 16.3
Samples: 6
Max nTPM: 23.9
Min nTPM: 9.9
P10809_1004
15.7
P10809_1023
9.9
P10809_1042
18.8
P10809_1061
23.9
P10809_1081
11.5
P10809_1108
17.9
Non-classical monocyte nTPM: 13.6
Samples: 5
Max nTPM: 21.5
Min nTPM: 9.8
P10809_1005
14.4
P10809_1053
11.9
P10809_1072
21.5
P10809_1082
9.8
P10809_1109
10.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.9
Monaco sample
nTPM
Classical monocyte nTPM: 14.9
Samples: 4
Max nTPM: 17.1
Min nTPM: 10.2
RHH5313_R3680
17.1
RHH5221_R3593
16.0
RHH5250_R3622
16.3
RHH5279_R3651
10.2
Intermediate monocyte nTPM: 14.4
Samples: 4
Max nTPM: 20.3
Min nTPM: 10.6
RHH5314_R3681
20.3
RHH5222_R3594
10.9
RHH5251_R3623
10.6
RHH5280_R3652
15.8
Non-classical monocyte nTPM: 14.5
Samples: 4
Max nTPM: 17.3
Min nTPM: 10.9
RHH5315_R3682
10.9
RHH5223_R3595
17.3
RHH5252_R3624
15.3
RHH5281_R3653
14.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
Schmiedel sample id
TPM
Classical monocyte TPM: 9.7
Samples: 91
Max TPM: 19.4
Min TPM: 3.2
MONOCYTES_1
19.4
MONOCYTES_2
17.9
MONOCYTES_3
17.6
MONOCYTES_4
16.6
MONOCYTES_5
16.2
MONOCYTES_6
16.2
MONOCYTES_7
16.1
MONOCYTES_8
15.8
MONOCYTES_9
15.6
MONOCYTES_10
15.3
MONOCYTES_11
15.2
MONOCYTES_12
15.1
MONOCYTES_13
14.9
MONOCYTES_14
14.8
MONOCYTES_15
14.6
MONOCYTES_16
14.0
MONOCYTES_17
14.0
MONOCYTES_18
13.8
MONOCYTES_19
13.8
MONOCYTES_20
13.8
MONOCYTES_21
13.3
MONOCYTES_22
13.3
MONOCYTES_23
13.2
MONOCYTES_24
13.1
MONOCYTES_25
13.0
MONOCYTES_26
12.1
MONOCYTES_27
11.9
MONOCYTES_28
11.9
MONOCYTES_29
11.8
MONOCYTES_30
11.6
MONOCYTES_31
11.3
MONOCYTES_32
11.3
MONOCYTES_33
10.7
MONOCYTES_34
10.7
MONOCYTES_35
10.7
MONOCYTES_36
10.7
MONOCYTES_37
10.4
MONOCYTES_38
10.4
MONOCYTES_39
10.3
MONOCYTES_40
10.0
MONOCYTES_41
9.7
MONOCYTES_42
9.7
MONOCYTES_43
9.5
MONOCYTES_44
9.5
MONOCYTES_45
9.4
MONOCYTES_46
9.4
MONOCYTES_47
9.3
MONOCYTES_48
9.2
MONOCYTES_49
9.1
MONOCYTES_50
8.9
MONOCYTES_51
8.8
MONOCYTES_52
8.5
MONOCYTES_53
8.5
MONOCYTES_54
7.9
MONOCYTES_55
7.9
MONOCYTES_56
7.7
MONOCYTES_57
7.5
MONOCYTES_58
7.4
MONOCYTES_59
7.4
MONOCYTES_60
7.3
MONOCYTES_61
7.3
MONOCYTES_62
7.2
MONOCYTES_63
7.2
MONOCYTES_64
7.0
MONOCYTES_65
6.9
MONOCYTES_66
6.8
MONOCYTES_67
6.8
MONOCYTES_68
6.7
MONOCYTES_69
6.6
MONOCYTES_70
6.6
MONOCYTES_71
6.5
MONOCYTES_72
6.4
MONOCYTES_73
6.1
MONOCYTES_74
6.1
MONOCYTES_75
5.6
MONOCYTES_76
5.6
MONOCYTES_77
5.5
MONOCYTES_78
5.5
MONOCYTES_79
5.4
MONOCYTES_80
5.3
MONOCYTES_81
4.9
MONOCYTES_82
4.8
MONOCYTES_83
4.6
MONOCYTES_84
4.2
MONOCYTES_85
4.1
MONOCYTES_86
4.0
MONOCYTES_87
3.9
MONOCYTES_88
3.8
MONOCYTES_89
3.7
MONOCYTES_90
3.3
MONOCYTES_91
3.2
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Non-classical monocyte TPM: 9.4
Samples: 90
Max TPM: 23.0
Min TPM: 1.8
M2_1
23.0
M2_2
21.5
M2_3
19.7
M2_4
18.4
M2_5
18.2
M2_6
18.2
M2_7
17.9
M2_8
16.5
M2_9
16.5
M2_10
15.7
M2_11
15.5
M2_12
14.3
M2_13
13.9
M2_14
13.6
M2_15
13.5
M2_16
13.4
M2_17
13.3
M2_18
13.3
M2_19
13.1
M2_20
12.8
M2_21
12.6
M2_22
12.1
M2_23
11.9
M2_24
11.9
M2_25
11.6
M2_26
11.6
M2_27
11.5
M2_28
11.3
M2_29
11.2
M2_30
11.1
M2_31
11.1
M2_32
11.0
M2_33
11.0
M2_34
10.7
M2_35
10.4
M2_36
10.3
M2_37
10.0
M2_38
10.0
M2_39
9.9
M2_40
9.8
M2_41
9.8
M2_42
9.7
M2_43
9.7
M2_44
9.6
M2_45
9.4
M2_46
9.1
M2_47
8.7
M2_48
8.6
M2_49
8.6
M2_50
8.6
M2_51
8.5
M2_52
8.5
M2_53
8.3
M2_54
8.3
M2_55
8.2
M2_56
8.1
M2_57
7.7
M2_58
7.4
M2_59
7.4
M2_60
7.3
M2_61
7.2
M2_62
7.0
M2_63
6.8
M2_64
6.6
M2_65
6.5
M2_66
6.3
M2_67
6.3
M2_68
6.2
M2_69
5.4
M2_70
5.1
M2_71
5.0
M2_72
5.0
M2_73
4.9
M2_74
4.7
M2_75
4.5
M2_76
4.2
M2_77
4.1
M2_78
4.1
M2_79
4.0
M2_80
3.8
M2_81
3.7
M2_82
3.7
M2_83
3.3
M2_84
3.1
M2_85
3.1
M2_86
2.6
M2_87
2.2
M2_88
2.2
M2_89
2.1
M2_90
1.8
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