A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.7
nTPM
Monaco:
64.7
nTPM
Schmiedel:
37.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.7
HPA sample
nTPM
Memory B-cell nTPM: 13.5
Samples: 6
Max nTPM: 16.8
Min nTPM: 6.9
P10809_1017
10.5
P10809_1025
16.8
P10809_1044
6.9
P10809_1063
13.7
P10809_1092
16.5
P10809_1105
16.5
Naive B-cell nTPM: 18.7
Samples: 6
Max nTPM: 28.0
Min nTPM: 11.9
P10809_1011
11.9
P10809_1029
17.3
P10809_1048
28.0
P10809_1067
15.3
P10809_1091
24.7
P10809_1104
15.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 57.0
Samples: 4
Max nTPM: 60.5
Min nTPM: 51.8
RHH5310_R3677
51.8
RHH5218_R3590
57.5
RHH5247_R3619
58.1
RHH5276_R3648
60.5
Naive B-cell nTPM: 63.8
Samples: 4
Max nTPM: 85.9
Min nTPM: 48.1
RHH5308_R3675
48.1
RHH5216_R3588
85.9
RHH5245_R3617
68.7
RHH5274_R3646
52.4
Non-switched memory B-cell nTPM: 64.2
Samples: 4
Max nTPM: 76.3
Min nTPM: 54.1
RHH5309_R3676
59.7
RHH5217_R3589
76.3
RHH5246_R3618
54.1
RHH5275_R3647
66.8
Plasmablast nTPM: 39.7
Samples: 4
Max nTPM: 46.9
Min nTPM: 31.5
RHH5312_R3679
46.0
RHH5220_R3592
34.3
RHH5249_R3621
31.5
RHH5278_R3650
46.9
Switched memory B-cell nTPM: 64.7
Samples: 4
Max nTPM: 71.2
Min nTPM: 54.8
RHH5311_R3678
54.8
RHH5219_R3591
68.8
RHH5248_R3620
71.2
RHH5277_R3649
63.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
Schmiedel sample id
TPM
Naive B-cell TPM: 37.7
Samples: 91
Max TPM: 46.6
Min TPM: 26.1
B_CELL_NAIVE_1
46.6
B_CELL_NAIVE_2
45.6
B_CELL_NAIVE_3
44.7
B_CELL_NAIVE_4
43.8
B_CELL_NAIVE_5
43.4
B_CELL_NAIVE_6
43.2
B_CELL_NAIVE_7
43.1
B_CELL_NAIVE_8
42.9
B_CELL_NAIVE_9
42.8
B_CELL_NAIVE_10
42.8
B_CELL_NAIVE_11
42.7
B_CELL_NAIVE_12
42.0
B_CELL_NAIVE_13
42.0
B_CELL_NAIVE_14
41.5
B_CELL_NAIVE_15
41.0
B_CELL_NAIVE_16
40.7
B_CELL_NAIVE_17
40.5
B_CELL_NAIVE_18
40.4
B_CELL_NAIVE_19
40.2
B_CELL_NAIVE_20
40.1
B_CELL_NAIVE_21
39.9
B_CELL_NAIVE_22
39.5
B_CELL_NAIVE_23
39.4
B_CELL_NAIVE_24
39.3
B_CELL_NAIVE_25
39.3
B_CELL_NAIVE_26
39.3
B_CELL_NAIVE_27
39.2
B_CELL_NAIVE_28
39.2
B_CELL_NAIVE_29
39.2
B_CELL_NAIVE_30
39.2
B_CELL_NAIVE_31
39.1
B_CELL_NAIVE_32
39.0
B_CELL_NAIVE_33
38.9
B_CELL_NAIVE_34
38.9
B_CELL_NAIVE_35
38.9
B_CELL_NAIVE_36
38.8
B_CELL_NAIVE_37
38.7
B_CELL_NAIVE_38
38.6
B_CELL_NAIVE_39
38.5
B_CELL_NAIVE_40
38.5
B_CELL_NAIVE_41
38.4
B_CELL_NAIVE_42
38.3
B_CELL_NAIVE_43
38.2
B_CELL_NAIVE_44
38.1
B_CELL_NAIVE_45
38.1
B_CELL_NAIVE_46
38.1
B_CELL_NAIVE_47
38.0
B_CELL_NAIVE_48
37.9
B_CELL_NAIVE_49
37.9
B_CELL_NAIVE_50
37.8
B_CELL_NAIVE_51
37.6
B_CELL_NAIVE_52
37.6
B_CELL_NAIVE_53
37.3
B_CELL_NAIVE_54
37.3
B_CELL_NAIVE_55
37.3
B_CELL_NAIVE_56
37.2
B_CELL_NAIVE_57
37.1
B_CELL_NAIVE_58
37.0
B_CELL_NAIVE_59
37.0
B_CELL_NAIVE_60
36.7
B_CELL_NAIVE_61
36.6
B_CELL_NAIVE_62
36.5
B_CELL_NAIVE_63
36.5
B_CELL_NAIVE_64
36.2
B_CELL_NAIVE_65
36.0
B_CELL_NAIVE_66
35.9
B_CELL_NAIVE_67
35.8
B_CELL_NAIVE_68
35.7
B_CELL_NAIVE_69
35.5
B_CELL_NAIVE_70
35.4
B_CELL_NAIVE_71
35.2
B_CELL_NAIVE_72
34.9
B_CELL_NAIVE_73
34.5
B_CELL_NAIVE_74
34.3
B_CELL_NAIVE_75
34.3
B_CELL_NAIVE_76
34.2
B_CELL_NAIVE_77
34.1
B_CELL_NAIVE_78
34.0
B_CELL_NAIVE_79
34.0
B_CELL_NAIVE_80
33.9
B_CELL_NAIVE_81
33.4
B_CELL_NAIVE_82
33.0
B_CELL_NAIVE_83
32.8
B_CELL_NAIVE_84
32.4
B_CELL_NAIVE_85
32.2
B_CELL_NAIVE_86
31.8
B_CELL_NAIVE_87
31.6
B_CELL_NAIVE_88
30.8
B_CELL_NAIVE_89
30.6
B_CELL_NAIVE_90
30.5
B_CELL_NAIVE_91
26.1
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The Human Protein Atlas project is funded
