A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.8
nTPM
Monaco:
63.5
nTPM
Schmiedel:
29.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
HPA sample
nTPM
Classical monocyte nTPM: 10.8
Samples: 6
Max nTPM: 15.9
Min nTPM: 7.7
P10809_1003
10.6
P10809_1020
15.9
P10809_1039
12.0
P10809_1058
8.8
P10809_1080
7.7
P10809_1107
9.5
Intermediate monocyte nTPM: 17.2
Samples: 6
Max nTPM: 22.2
Min nTPM: 10.8
P10809_1004
20.2
P10809_1023
17.8
P10809_1042
18.4
P10809_1061
22.2
P10809_1081
10.8
P10809_1108
13.5
Non-classical monocyte nTPM: 23.8
Samples: 5
Max nTPM: 55.3
Min nTPM: 8.2
P10809_1005
15.9
P10809_1053
23.1
P10809_1072
55.3
P10809_1082
8.2
P10809_1109
16.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.5
Monaco sample
nTPM
Classical monocyte nTPM: 33.4
Samples: 4
Max nTPM: 47.2
Min nTPM: 26.5
RHH5313_R3680
26.8
RHH5221_R3593
47.2
RHH5250_R3622
33.1
RHH5279_R3651
26.5
Intermediate monocyte nTPM: 47.9
Samples: 4
Max nTPM: 56.1
Min nTPM: 43.3
RHH5314_R3681
48.7
RHH5222_R3594
43.3
RHH5251_R3623
56.1
RHH5280_R3652
43.6
Non-classical monocyte nTPM: 63.5
Samples: 4
Max nTPM: 80.1
Min nTPM: 48.0
RHH5315_R3682
65.9
RHH5223_R3595
80.1
RHH5252_R3624
59.9
RHH5281_R3653
48.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
Schmiedel sample id
TPM
Classical monocyte TPM: 12.5
Samples: 91
Max TPM: 18.6
Min TPM: 6.7
MONOCYTES_1
18.6
MONOCYTES_2
17.6
MONOCYTES_3
17.4
MONOCYTES_4
16.9
MONOCYTES_5
16.6
MONOCYTES_6
16.6
MONOCYTES_7
16.4
MONOCYTES_8
16.3
MONOCYTES_9
16.2
MONOCYTES_10
16.1
MONOCYTES_11
16.0
MONOCYTES_12
15.6
MONOCYTES_13
15.4
MONOCYTES_14
15.4
MONOCYTES_15
15.4
MONOCYTES_16
15.2
MONOCYTES_17
15.2
MONOCYTES_18
15.1
MONOCYTES_19
15.0
MONOCYTES_20
14.9
MONOCYTES_21
14.7
MONOCYTES_22
14.7
MONOCYTES_23
14.5
MONOCYTES_24
14.5
MONOCYTES_25
14.5
MONOCYTES_26
14.3
MONOCYTES_27
14.2
MONOCYTES_28
14.1
MONOCYTES_29
13.9
MONOCYTES_30
13.8
MONOCYTES_31
13.8
MONOCYTES_32
13.5
MONOCYTES_33
13.4
MONOCYTES_34
13.1
MONOCYTES_35
13.1
MONOCYTES_36
13.1
MONOCYTES_37
13.0
MONOCYTES_38
13.0
MONOCYTES_39
13.0
MONOCYTES_40
12.9
MONOCYTES_41
12.9
MONOCYTES_42
12.4
MONOCYTES_43
12.2
MONOCYTES_44
12.1
MONOCYTES_45
12.0
MONOCYTES_46
12.0
MONOCYTES_47
11.9
MONOCYTES_48
11.8
MONOCYTES_49
11.8
MONOCYTES_50
11.7
MONOCYTES_51
11.7
MONOCYTES_52
11.6
MONOCYTES_53
11.6
MONOCYTES_54
11.5
MONOCYTES_55
11.5
MONOCYTES_56
11.5
MONOCYTES_57
11.4
MONOCYTES_58
11.3
MONOCYTES_59
11.3
MONOCYTES_60
11.2
MONOCYTES_61
11.1
MONOCYTES_62
11.1
MONOCYTES_63
11.0
MONOCYTES_64
10.9
MONOCYTES_65
10.7
MONOCYTES_66
10.7
MONOCYTES_67
10.6
MONOCYTES_68
10.6
MONOCYTES_69
10.4
MONOCYTES_70
10.4
MONOCYTES_71
10.4
MONOCYTES_72
10.4
MONOCYTES_73
10.4
MONOCYTES_74
10.1
MONOCYTES_75
10.1
MONOCYTES_76
10.1
MONOCYTES_77
9.9
MONOCYTES_78
9.9
MONOCYTES_79
9.8
MONOCYTES_80
9.8
MONOCYTES_81
9.7
MONOCYTES_82
9.7
MONOCYTES_83
9.6
MONOCYTES_84
9.6
MONOCYTES_85
9.5
MONOCYTES_86
9.4
MONOCYTES_87
9.3
MONOCYTES_88
9.2
MONOCYTES_89
7.7
MONOCYTES_90
6.9
MONOCYTES_91
6.7
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Non-classical monocyte TPM: 29.3
Samples: 90
Max TPM: 41.1
Min TPM: 22.0
M2_1
41.1
M2_2
39.0
M2_3
38.2
M2_4
35.6
M2_5
35.6
M2_6
35.2
M2_7
34.5
M2_8
34.4
M2_9
34.0
M2_10
33.9
M2_11
33.9
M2_12
33.7
M2_13
33.5
M2_14
33.5
M2_15
33.4
M2_16
33.3
M2_17
32.7
M2_18
32.4
M2_19
32.0
M2_20
31.9
M2_21
31.9
M2_22
31.9
M2_23
31.7
M2_24
31.6
M2_25
31.6
M2_26
31.3
M2_27
31.3
M2_28
31.1
M2_29
31.1
M2_30
30.9
M2_31
30.6
M2_32
30.6
M2_33
30.5
M2_34
30.2
M2_35
30.2
M2_36
30.2
M2_37
29.8
M2_38
29.8
M2_39
29.7
M2_40
29.7
M2_41
29.7
M2_42
29.5
M2_43
29.5
M2_44
29.5
M2_45
29.4
M2_46
29.3
M2_47
29.2
M2_48
29.1
M2_49
29.0
M2_50
28.4
M2_51
28.2
M2_52
28.1
M2_53
28.0
M2_54
27.9
M2_55
27.9
M2_56
27.8
M2_57
27.7
M2_58
27.5
M2_59
27.4
M2_60
27.4
M2_61
27.3
M2_62
27.1
M2_63
27.0
M2_64
27.0
M2_65
27.0
M2_66
26.9
M2_67
26.8
M2_68
26.4
M2_69
26.4
M2_70
26.4
M2_71
26.3
M2_72
26.1
M2_73
25.7
M2_74
25.6
M2_75
25.5
M2_76
25.5
M2_77
25.4
M2_78
25.2
M2_79
25.1
M2_80
25.0
M2_81
24.9
M2_82
24.5
M2_83
24.4
M2_84
23.6
M2_85
23.3
M2_86
23.0
M2_87
23.0
M2_88
22.7
M2_89
22.6
M2_90
22.0
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