MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA Brain:49.0 nTPM
GTEx:17.1 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:66.4 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2666 Male, age 74, left hemisphere 47.2
1827 Male, age 72, unknown 38.9
2019 Male, age 18, unknown 38.8
2219 Male, age 76, both hemispheres 38.4
2586 Male, age 75, left hemisphere 38.0
1870 Female, age 42, unknown 36.1
2411 Female, age 72, unknown 35.1
1833 Male, age 53, unknown 31.6
1830 Male, age 51, unknown 31.5
2828 Female, age 72, unknown 28.7
Dorsal raphe nucleus
nTPM: 34.5
2047 Male, age 72, unknown 39.8
1828 Male, age 53, unknown 36.2
2750 Male, age 76, both hemispheres 33.6
2298 Female, age 72, unknown 33.2
2016 Female, age 72, unknown 29.9
Inferior colliculus
nTPM: 38.2
2097 Female, age 72, unknown 39.4
1890 Male, age 53, unknown 39.1
2849 Male, age 72, unknown 38.4
1848 Female, age 42, unknown 35.8
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 39.9
1795 Male, age 51, unknown 35.8
2502 Female, age 75, unknown 35.5
Periaquaductal grey, dorsal
nTPM: 36.2
2850 Male, age 76, both hemispheres 38.1
1840 Male, age 53, unknown 37.9
1831 Male, age 72, unknown 35.2
2464 Female, age 72, unknown 33.6
Periaquaductal grey, lateral
nTPM: 30.0
2053 Male, age 18, unknown 34.2
2140 Male, age 76, both hemispheres 28.7
2272 Male, age 74, both hemispheres 27.1
Pretectal area
nTPM: 40.8
1816 Male, age 51, unknown 53.5
1944 Female, age 72, unknown 49.2
2007 Male, age 72, unknown 49.2
1817 Female, age 42, unknown 46.9
1815 Male, age 53, unknown 43.5
2407 Male, age 75, both hemispheres 41.5
2667 Female, age 75, unknown 39.9
2224 Female, age 72, unknown 37.1
2825 Male, age 18, unknown 31.4
2316 Male, age 76, right hemisphere 30.8
2273 Male, age 74, both hemispheres 25.9
Red nucleus
nTPM: 34.7
1821 Female, age 72, unknown 39.6
2725 Female, age 75, unknown 37.6
1954 Female, age 42, unknown 37.3
2785 Male, age 18, unknown 35.7
1865 Male, age 51, unknown 35.6
2584 Male, age 75, left hemisphere 35.5
2823 Male, age 76, right hemisphere 35.1
2503 Female, age 72, unknown 34.5
1904 Male, age 53, unknown 33.8
2588 Male, age 74, left hemisphere 33.4
2769 Male, age 72, unknown 29.2
2227 Male, age 72, unknown 28.8
Substantia nigra
nTPM: 49.0
2409 Female, age 72, unknown 61.7
2241 Male, age 72, unknown 60.7
1916 Female, age 42, unknown 51.1
2665 Male, age 74, both hemispheres 50.5
1889 Female, age 72, unknown 50.3
1941 Male, age 53, unknown 49.3
1851 Male, age 51, unknown 47.3
2699 Male, age 18, unknown 43.8
2590 Female, age 75, unknown 37.9
2583 Male, age 75, right hemisphere 37.8
Superior colliculus
nTPM: 36.1
2668 Female, age 75, unknown 43.8
2087 Female, age 72, unknown 42.2
1895 Male, age 76, right hemisphere 39.6
2261 Male, age 18, unknown 36.7
1796 Male, age 53, unknown 36.0
2664 Male, age 75, both hemispheres 35.6
2587 Male, age 74, left hemisphere 34.5
1839 Male, age 51, unknown 32.9
1913 Female, age 42, unknown 32.9
1995 Male, age 72, unknown 26.8
Ventral tegmental area
nTPM: 37.9
1915 Female, age 42, unknown 41.2
2218 Male, age 76, both hemispheres 41.0
2410 Female, age 72, unknown 39.1
1942 Male, age 51, unknown 36.1
2021 Male, age 53, unknown 35.0
2223 Female, age 72, unknown 34.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.1
Samples: 183

Max nTPM: 38.0
Min nTPM: 9.1
Std nTPM: 5.0
Median nTPM: 15.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 32.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 31.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 30.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 27.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 27.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.5
Samples: 4

Max nTPM: 60.0
Min nTPM: 32.1
Sample A Female 60.0
Sample B Female 39.2
Sample C Male 54.5
Sample D Male 32.1
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 84.8
Min nTPM: 47.3
Sample A Female 47.3
Sample B Female 47.3
Sample C Male 84.8
Sample D Male 60.1
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 51.4
Min nTPM: 39.8
Sample B Female 39.8
Sample C Male 51.4
Sample D Male 41.1
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 75.0
Min nTPM: 36.8
Sample A Female 59.4
Sample B Female 36.8
Sample C Male 75.0
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.4
Samples: 4

Max nTPM: 69.6
Min nTPM: 62.3
Sample A Male 65.6
Sample B Male 69.6
Sample C Female 68.1
Sample D Female 62.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
73817935 Antisense, RP_051214_01_A06, Mouse strain C57BL/6J (56 days, male) 9.7
632510 Antisense, RP_040907_01_F08, Mouse strain C57BL/6J (56 days, male) 7.8

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