A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.7
nTPM
Monaco:
374.1
nTPM
Schmiedel:
56.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.7
HPA sample
nTPM
Memory B-cell nTPM: 74.7
Samples: 6
Max nTPM: 83.0
Min nTPM: 67.3
P10809_1017
75.5
P10809_1025
73.8
P10809_1044
67.3
P10809_1063
67.5
P10809_1092
81.2
P10809_1105
83.0
Naive B-cell nTPM: 68.3
Samples: 6
Max nTPM: 115.1
Min nTPM: 50.6
P10809_1011
51.3
P10809_1029
50.6
P10809_1048
115.1
P10809_1067
63.5
P10809_1091
70.6
P10809_1104
58.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
374.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 282.9
Samples: 4
Max nTPM: 313.7
Min nTPM: 230.8
RHH5310_R3677
313.7
RHH5218_R3590
291.3
RHH5247_R3619
295.6
RHH5276_R3648
230.8
Naive B-cell nTPM: 237.3
Samples: 4
Max nTPM: 298.0
Min nTPM: 195.2
RHH5308_R3675
195.2
RHH5216_R3588
298.0
RHH5245_R3617
210.8
RHH5274_R3646
245.1
Non-switched memory B-cell nTPM: 253.0
Samples: 4
Max nTPM: 297.1
Min nTPM: 216.8
RHH5309_R3676
256.4
RHH5217_R3589
297.1
RHH5246_R3618
241.6
RHH5275_R3647
216.8
Plasmablast nTPM: 374.2
Samples: 4
Max nTPM: 422.4
Min nTPM: 324.3
RHH5312_R3679
390.4
RHH5220_R3592
422.4
RHH5249_R3621
359.5
RHH5278_R3650
324.3
Switched memory B-cell nTPM: 331.3
Samples: 4
Max nTPM: 367.6
Min nTPM: 251.9
RHH5311_R3678
362.7
RHH5219_R3591
343.0
RHH5248_R3620
367.6
RHH5277_R3649
251.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.4
Schmiedel sample id
TPM
Naive B-cell TPM: 56.4
Samples: 91
Max TPM: 73.2
Min TPM: 41.0
B_CELL_NAIVE_1
73.2
B_CELL_NAIVE_2
72.7
B_CELL_NAIVE_3
72.7
B_CELL_NAIVE_4
69.8
B_CELL_NAIVE_5
66.1
B_CELL_NAIVE_6
66.0
B_CELL_NAIVE_7
65.3
B_CELL_NAIVE_8
65.3
B_CELL_NAIVE_9
64.3
B_CELL_NAIVE_10
63.7
B_CELL_NAIVE_11
63.6
B_CELL_NAIVE_12
63.0
B_CELL_NAIVE_13
62.3
B_CELL_NAIVE_14
61.7
B_CELL_NAIVE_15
61.4
B_CELL_NAIVE_16
61.0
B_CELL_NAIVE_17
60.9
B_CELL_NAIVE_18
60.8
B_CELL_NAIVE_19
60.5
B_CELL_NAIVE_20
60.4
B_CELL_NAIVE_21
60.4
B_CELL_NAIVE_22
60.0
B_CELL_NAIVE_23
59.9
B_CELL_NAIVE_24
59.8
B_CELL_NAIVE_25
59.5
B_CELL_NAIVE_26
59.5
B_CELL_NAIVE_27
59.3
B_CELL_NAIVE_28
59.3
B_CELL_NAIVE_29
58.7
B_CELL_NAIVE_30
58.5
B_CELL_NAIVE_31
58.4
B_CELL_NAIVE_32
58.4
B_CELL_NAIVE_33
58.3
B_CELL_NAIVE_34
58.2
B_CELL_NAIVE_35
57.9
B_CELL_NAIVE_36
57.6
B_CELL_NAIVE_37
57.6
B_CELL_NAIVE_38
57.5
B_CELL_NAIVE_39
57.3
B_CELL_NAIVE_40
57.2
B_CELL_NAIVE_41
57.1
B_CELL_NAIVE_42
57.0
B_CELL_NAIVE_43
56.6
B_CELL_NAIVE_44
56.6
B_CELL_NAIVE_45
56.6
B_CELL_NAIVE_46
56.6
B_CELL_NAIVE_47
56.4
B_CELL_NAIVE_48
56.4
B_CELL_NAIVE_49
56.1
B_CELL_NAIVE_50
56.0
B_CELL_NAIVE_51
55.9
B_CELL_NAIVE_52
55.9
B_CELL_NAIVE_53
55.8
B_CELL_NAIVE_54
55.8
B_CELL_NAIVE_55
55.8
B_CELL_NAIVE_56
55.4
B_CELL_NAIVE_57
55.0
B_CELL_NAIVE_58
54.2
B_CELL_NAIVE_59
54.1
B_CELL_NAIVE_60
54.0
B_CELL_NAIVE_61
54.0
B_CELL_NAIVE_62
53.9
B_CELL_NAIVE_63
53.3
B_CELL_NAIVE_64
53.1
B_CELL_NAIVE_65
53.1
B_CELL_NAIVE_66
52.8
B_CELL_NAIVE_67
52.8
B_CELL_NAIVE_68
52.7
B_CELL_NAIVE_69
52.6
B_CELL_NAIVE_70
52.6
B_CELL_NAIVE_71
52.0
B_CELL_NAIVE_72
51.9
B_CELL_NAIVE_73
51.6
B_CELL_NAIVE_74
51.6
B_CELL_NAIVE_75
51.2
B_CELL_NAIVE_76
50.8
B_CELL_NAIVE_77
50.4
B_CELL_NAIVE_78
50.3
B_CELL_NAIVE_79
50.2
B_CELL_NAIVE_80
50.2
B_CELL_NAIVE_81
49.1
B_CELL_NAIVE_82
48.8
B_CELL_NAIVE_83
48.7
B_CELL_NAIVE_84
47.9
B_CELL_NAIVE_85
46.9
B_CELL_NAIVE_86
46.5
B_CELL_NAIVE_87
45.8
B_CELL_NAIVE_88
45.4
B_CELL_NAIVE_89
44.7
B_CELL_NAIVE_90
43.3
B_CELL_NAIVE_91
41.0
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